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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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primary_citation_author:"Nudelman I" AND author_name:"Ludtke"

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EMDB [6]
EMPIAR [2]

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EMD-24224

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Combined 3D structure of the isolated yeast NPC

Release date: Jan. 26, 2022
Resolution: 7.6 Å
EM Method: Single-particle

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2022) 185 pp. 361-378.e25 [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

Sample:

Central transporter (Complex from Saccharomyces cerevisiae)
Double nuclear outer ring of nup84 complex pairs with nup188-192 (Complex from Saccharomyces cerevisiae)
Isolated yeast npc (Complex)
Pom152 ring (Complex from Saccharomyces cerevisiae)
Nsp1 complex connections to fg domains (Complex from Saccharomyces cerevisiae)
Inner ring of spokes from npc (9 MDa, Complex from Saccharomyces cerevisiae)

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EMD-24225

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Low resolution, multi-part 3D structure of the isolated yeast NPC

Release date: Jan. 26, 2022
Resolution: 24.0 Å
EM Method: Single-particle

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2021) [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

Sample:

Central transporter (Complex from Saccharomyces cerevisiae)
Double nuclear outer ring (Complex from Saccharomyces cerevisiae)
3d map of yeast npc (52 MDa, Complex)
Nup82 complex hook ring (Complex from Saccharomyces cerevisiae)
Inner spoke ring of yeast npc (Complex from Saccharomyces cerevisiae)

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EMD-24231

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Double nuclear outer ring from the isolated yeast NPC

Release date: Jan. 26, 2022
Resolution: 11.6 Å
EM Method: Single-particle
Fitted PDBs: 7n84
Q-score: 0.063

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2022) 185 pp. 361-378.e25 [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

Sample:

Unknown (5 kDa, Protein from Saccharomyces cerevisiae)
Yeast double outer ring (10 MDa, Complex from Saccharomyces cerevisiae)
Nucleoporin nup133 (133 kDa, Protein from Saccharomyces cerevisiae)
Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin 145c (81 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin seh1 (39 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup84 (83 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup188 (188 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup120 (120 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup85 (84 kDa, Protein from Saccharomyces cerevisiae)

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EMD-24232

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Inner ring spoke from the isolated yeast NPC

Release date: Jan. 26, 2022
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 7n85
Q-score: 0.113

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2022) 185 pp. 361-378.e25 [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

Sample:

Nucleoporin nic96 (96 kDa, Protein from Saccharomyces cerevisiae)
Spoke from yeast inner ring (16 MDa, Complex from Saccharomyces cerevisiae)
Nucleoporin nup170 (169 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup49/nsp49 (49 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin asm4 (58 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nsp1 (86 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup192 (191 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup57 (57 kDa, Protein from Saccharomyces cerevisiae)
Unknown connectors (3 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup188 (188 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup53 (52 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup157 (156 kDa, Protein from Saccharomyces cerevisiae)

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EMD-24258

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Structure of the in situ yeast NPC

Release date: Jan. 26, 2022
Resolution: 37.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7n9f
Q-score: 0.043

Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP

Cell (2022) 185 pp. 361-378.e25 [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]

Sample:

Nucleoporin nic96 (96 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup82 (82 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup170 (169 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup159 (159 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin seh1 (39 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nsp1 (86 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup192 (191 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup53 (52 kDa, Protein from Saccharomyces cerevisiae)
Dynein light chain 1, cytoplasmic (10 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup133 (133 kDa, Protein from Saccharomyces cerevisiae)
Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin 145c (81 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup84 (83 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup188 (188 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup120 (120 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup49/nsp49 (49 kDa, Protein from Saccharomyces cerevisiae)
Yeast npc (52 MDa, Cellular component from Saccharomyces cerevisiae)
Nucleoporin asm4 (58 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup57 (57 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup85 (84 kDa, Protein from Saccharomyces cerevisiae)
Orphans bound to nup192 ntd (3 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup157 (156 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMPIAR-10162

Related EMDB

Integrative structure and functional anatomy of a nuclear pore complex

Release date: May 8, 2019
Dataset size: 11.8 GB
Experiment type: EMDB

Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

Nature (2018) 555 pp. 475-482 [ Pubmed: 29539637 DOI: 10.1038/nature26003 ]

Image sets:

EMD-7321

Download Map 3D View Raw data

Integrative Structure and Functional Anatomy of a Nuclear Pore Complex

Release date: March 28, 2018
Resolution: 28.0 Å
EM Method: Subtomogram averaging

Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

Nature (2018) [ Pubmed: 29539637 DOI: doi:10.1038/nature26003 ]

Sample:

Saccharomyces cerevisiae npc (nuclear pore complex) (87 MDa, Complex from Saccharomyces cerevisiae)

EMPIAR-10155

Related EMDB

Cryo-electron tomography of the yeast NPC

Release date: March 20, 2018
Dataset size: 127.1 GB
Experiment type: EMDB

Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan J, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, Jason de la Cruz M, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

Nature (2018) [ Pubmed: 29539637 DOI: 10.1038/nature26003 ]

Image sets:

Unaligned K2 DED image tilt series of yeast NPC and associated files

Sort by: Download

Showing 1 - 8 of 8. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [6]
EMPIAR [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: