Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-His(5,Ser)
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8cbk
Q-score: 0.452
Meynier V, Hardwick SW, Catala M, Roske JJ, Oerum S, Chirgadze DY, Barraud P, Yue WW, Luisi BF, Tisne C
Nat Commun (2024) 15 pp. 4683-4683 [ DOI: doi:10.1038/s41467-024-49132-0 Pubmed: 38824131 ]
- Mitochondrial ribonuclease p catalytic subunit (61 kDa, Protein from Homo sapiens)
- 3-hydroxyacyl-coa dehydrogenase type-2 (26 kDa, Protein from Homo sapiens)
- Trna methyltransferase 10 homolog c (48 kDa, Protein from Homo sapiens)
- Mitochondrial precursor trna-his(5,ser) (29 kDa, RNA from Homo sapiens)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Human mitochondrial rnase p in complex with mitochondrial pre-trnahis-ser (269 kDa, Complex from Homo sapiens)
Structure of human mitochondrial RNase Z in complex with mitochondrial pre-tRNA-His(0,Ser)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8cbl
Q-score: 0.443
Meynier V, Hardwick SW, Catala M, Roske JJ, Oerum S, Chirgadze DY, Barraud P, Yue WW, Luisi BF, Tisne C
Nat Commun (2024) 15 pp. 4683-4683 [ Pubmed: 38824131 DOI: doi:10.1038/s41467-024-49132-0 ]
- Human mitochondrial rnase p in complex with mitochondrial pre-trna-his(0,ser) (300 kDa, Complex from Homo sapiens)
- Mitochondrial precursor trna-his(0,ser) (40 kDa, RNA from Homo sapiens)
- Trna methyltransferase 10 homolog c (48 kDa, Protein from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Zinc phosphodiesterase elac protein 2 (92 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- 3-hydroxyacyl-coa dehydrogenase type-2 (26 kDa, Protein from Homo sapiens)
Structure of human mitochondrial CCA-adding enzyme in complex with mitochondrial pre-tRNA-Ile
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8cbm
Q-score: 0.428
Meynier V, Hardwick SW, Catala M, Roske JJ, Oerum S, Chirgadze DY, Barraud P, Yue WW, Luisi BF, Tisne C
Nat Commun (2024) 15 pp. 4683-4683 [ Pubmed: 38824131 DOI: doi:10.1038/s41467-024-49132-0 ]
- Water (18 Da, Ligand)
- Cytidine-5'-diphosphate (403 Da, Ligand)
- Mitochondrial precursor trna-ile(0,0) (22 kDa, RNA from Homo sapiens)
- Trna methyltransferase 10 homolog c (48 kDa, Protein from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Human mitochondrial cca-adding enzyme in complex with mitochondrial pre-trnaile (270 kDa, Complex from Homo sapiens)
- Cca trna nucleotidyltransferase 1, mitochondrial (44 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- 3-hydroxyacyl-coa dehydrogenase type-2 (26 kDa, Protein from Homo sapiens)
Structure of human mitochondrial MRPP1-MRPP2 in complex with mitochondrial pre-tRNA-Ile
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cbo
Q-score: 0.469
Meynier V, Hardwick SW, Catala M, Roske JJ, Oerum S, Chirgadze DY, Barraud P, Yue WW, Luisi BF, Tisne C
Nat Commun (2024) 15 pp. 4683-4683 [ Pubmed: 38824131 DOI: doi:10.1038/s41467-024-49132-0 ]
- 3-hydroxyacyl-coa dehydrogenase type-2 (26 kDa, Protein from Homo sapiens)
- Mitochondrial precursor trna-ile(5,4) (25 kDa, RNA from Homo sapiens)
- Human mitochondrial mrpp1-mrpp2 (Complex from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Mitochondrial pre-trnaile (Complex from Homo sapiens)
- Trna methyltransferase 10 homolog c (24 kDa, Protein from Homo sapiens)
- Human mitochondrial mrpp1-mrpp2 in complex with mitochondrial pre-trnaile (170 kDa, Complex)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6tnn
Q-score: 0.522
Oerum S, Dendooven T, Catala M, Gilet L, Degut C, Trinquier A, Bourguet M, Barraud P, Cianferani S, Luisi BF, Condon C, Tisne C
Mol Cell (2020) 80 pp. 227- [ Pubmed: 32991829 DOI: doi:10.1016/j.molcel.2020.09.008 ]
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Pre-23s rrna (950 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168 )
- 50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Mini-rnase iii bound to 50s ribosome with precursor 23s rrna (Complex from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Mini-rnase iii bound to 50s ribosome with precursor 23s rrna (Complex)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l10 (18 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168 )
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- Mini-ribonuclease 3 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168 )
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 5s rrna (37 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
RNase M5 bound to 50S ribosome with precursor 5S rRNA
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6tpq
Q-score: 0.474
Oerum S, Dendooven T, Catala M, Gilet L, Degut C, Trinquier A, Bourguet M, Barraud P, Cianferani S, Luisi BF, Condon C, Tisne C
Mol Cell (2020) 80 pp. 227- [ DOI: doi:10.1016/j.molcel.2020.09.008 Pubmed: 32991829 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l10 (18 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosome with precursor 5s rrna (Complex from Bacillus subtilis subsp. subtilis str. 168)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Ribonuclease m5 (Complex from Geobacillus stearothermophilus)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Rnase m5 bound to 50s ribosome with precursor 5s rrna (Complex)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Pre-5s rrna (39 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Pre-23s rrna (948 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Ribonuclease m5 (20 kDa, Protein from Geobacillus stearothermophilus)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)