Human Fc epsilon RI in complex with hIgE Fc (TMD disordered)
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 8k7r
Q-score: 0.452
Zhang Z, Yui M, Ohto U, Shimizu T
Sci Signal (2024) 17 pp. eadn1303-eadn1303 [ DOI: doi:10.1126/scisignal.adn1303 Pubmed: 39656861 ]
- High affinity immunoglobulin epsilon receptor subunit alpha (32 kDa, Protein from Homo sapiens)
- Ige fc (39 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human fc epsilon ri in complex with hige fc (Complex from Homo sapiens)
Human Fc epsilon RI in complex with mIgE Fc (TMD disordered)
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8k7s
Q-score: 0.358
Zhang Z, Yui M, Ohto U, Shimizu T
Sci Signal (2024) 17 pp. eadn1303-eadn1303 [ DOI: doi:10.1126/scisignal.adn1303 Pubmed: 39656861 ]
- Fcer1a (32 kDa, Protein from Homo sapiens)
- Ige fc (40 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human fc epsilon ri in complex with mige fc (Complex from Homo sapiens)
Cryo-EM structure of human SIDT1 bound to cholesterol
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8kcw
Q-score: 0.542
Hirano Y, Ohto U, Ichi I, Sato R, Miyake K, Shimizu T
Commun Biol (2024) 7 pp. 664-664 [ DOI: doi:10.1038/s42003-024-06346-8 Pubmed: 38811802 ]
- Sid1 transmembrane family member 1 (96 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Homo-dimer of sidt1 (Complex from Homo sapiens)
Cryo-EM structure of human SIDT1
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8kcx
Q-score: 0.502
Hirano Y, Ohto U, Ichi I, Sato R, Miyake K, Shimizu T
Commun Biol (2024) 7 pp. 664-664 [ DOI: doi:10.1038/s42003-024-06346-8 Pubmed: 38811802 ]
- Sid1 transmembrane family member 1 (96 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Homodimer of sidt1 (Complex from Homo sapiens)
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8hrx
Q-score: 0.523
Asami J, Park JH, Nomura Y, Kobayashi C, Mifune J, Ishimoto N, Uemura T, Liu K, Sato Y, Zhang Z, Muramatsu M, Wakita T, Drew D, Iwata S, Shimizu T, Watashi K, Park SY, Nomura N, Ohto U
Nat Struct Mol Biol (2024) 31 pp. 447-454 [ Pubmed: 38233573 DOI: doi:10.1038/s41594-023-01191-5 ]
- Ntcp-myr-pres1-yn9048fab (Complex from Homo sapiens)
- Fab heavy chain from antibody igg clone number yn9048 (26 kDa, Protein from Ondatra zibethicus)
- Pres1 protein (fragment) (6 kDa, Protein from Hepatitis B virus)
- Fab light chain from antibody igg clone number yn9048 (23 kDa, Protein from Ondatra zibethicus)
- Sodium/bile acid cotransporter (38 kDa, Protein from Homo sapiens)
Cryo-EM structure of human NTCP-myr-preS1-YN9016Fab complex
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8hry
Q-score: 0.523
Asami J, Park JH, Nomura Y, Kobayashi C, Mifune J, Ishimoto N, Uemura T, Liu K, Sato Y, Zhang Z, Muramatsu M, Wakita T, Drew D, Iwata S, Shimizu T, Watashi K, Park SY, Nomura N, Ohto U
Nat Struct Mol Biol (2024) 31 pp. 447-454 [ Pubmed: 38233573 DOI: doi:10.1038/s41594-023-01191-5 ]
- Large s protein (fragment) (6 kDa, Protein from Hepatitis B virus)
- Fab light chain from antibody igg clone number yn9016 (23 kDa, Protein from Ondatra zibethicus)
- Fab heavy chain from antibody igg clone number yn9016 (25 kDa, Protein from Ondatra zibethicus)
- Ntcp-myr-pres1-yn9016fab (Complex from Homo sapiens)
- Sodium/bile acid cotransporter (38 kDa, Protein from Homo sapiens)
Cryo-EM structure of human SLC15A4 in complex with Lys-Leu (outward-facing open)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8wx4
Q-score: 0.514
Zhang Z, Kasai S, Sakaniwa K, Fujimura A, Ohto U, Shimizu T
To Be Published
- Leucine (131 Da, Ligand)
- Lysine (147 Da, Ligand)
- Solute carrier family 15 member 4 (64 kDa, Protein from Homo sapiens)
- Human slc15a4 with kl (Complex from Homo sapiens)
Cryo-EM structure of human SLC15A4 in complex with TASL (inward-facing open)
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 8wx5
Q-score: 0.36
Zhang Z, Kasai S, Sakaniwa K, Fujimura A, Ohto U, Shimizu T
To Be Published
- Human slc15a4 and tasl complex (Complex from Homo sapiens)
- Tasl (tasl-slc15a4 fusion protein) (1 kDa, Protein from Homo sapiens)
- Solute carrier family 15 member 4 (64 kDa, Protein from Homo sapiens)
Cryo-EM structure of human SLC15A3 (dimer)
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8wx2
Q-score: 0.324
Zhang Z, Kasai S, Sakaniwa K, Fujimura A, Ohto U, Shimizu T
To Be Published
- Solute carrier family 15 member 3 (67 kDa, Protein from Homo sapiens)
- Human slc15a3 (Complex from Homo sapiens)
Cryo-EM structure of human SLC15A4 (outward-facing open)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8wx3
Q-score: 0.573
Zhang Z, Kasai S, Sakaniwa K, Fujimura A, Ohto U, Shimizu T
To Be Published
- Human slc15a4 (Complex from Homo sapiens)
- Solute carrier family 15 member 4 (64 kDa, Protein from Homo sapiens)