Cryo-EM structure of human SIDT1 bound to cholesterol
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8kcw
Q-score: 0.542
Hirano Y, Ohto U, Ichi I, Sato R, Miyake K, Shimizu T
Commun Biol (2024) 7 pp. 664-664 [ DOI: doi:10.1038/s42003-024-06346-8 Pubmed: 38811802 ]
- Sid1 transmembrane family member 1 (96 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Homo-dimer of sidt1 (Complex from Homo sapiens)
Cryo-EM structure of human SIDT1
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8kcx
Q-score: 0.502
Hirano Y, Ohto U, Ichi I, Sato R, Miyake K, Shimizu T
Commun Biol (2024) 7 pp. 664-664 [ DOI: doi:10.1038/s42003-024-06346-8 Pubmed: 38811802 ]
- Sid1 transmembrane family member 1 (96 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Homodimer of sidt1 (Complex from Homo sapiens)
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8hrx
Q-score: 0.523
Asami J, Park JH, Nomura Y, Kobayashi C, Mifune J, Ishimoto N, Uemura T, Liu K, Sato Y, Zhang Z, Muramatsu M, Wakita T, Drew D, Iwata S, Shimizu T, Watashi K, Park SY, Nomura N, Ohto U
Nat Struct Mol Biol (2024) 31 pp. 447-454 [ Pubmed: 38233573 DOI: doi:10.1038/s41594-023-01191-5 ]
- Ntcp-myr-pres1-yn9048fab (Complex from Homo sapiens)
- Fab heavy chain from antibody igg clone number yn9048 (26 kDa, Protein from Ondatra zibethicus)
- Pres1 protein (fragment) (6 kDa, Protein from Hepatitis B virus)
- Fab light chain from antibody igg clone number yn9048 (23 kDa, Protein from Ondatra zibethicus)
- Sodium/bile acid cotransporter (38 kDa, Protein from Homo sapiens)
Cryo-EM structure of human SLC15A4 (outward-facing open)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8wx3
Q-score: 0.573
Zhang Z, Kasai S, Sakaniwa K, Fujimura A, Ohto U, Shimizu T
To Be Published
- Human slc15a4 (Complex from Homo sapiens)
- Solute carrier family 15 member 4 (64 kDa, Protein from Homo sapiens)
SARS-CoV-2 M protein dimer (long form) in complex with YN7756_1 Fab
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7vgr
Q-score: 0.504
Zhang Z, Nomura N, Muramoto Y, Ekimoto T, Uemura T, Liu K, Yui M, Kono N, Aoki J, Ikeguchi M, Noda T, Iwata S, Ohto U, Shimizu T
Nat Commun (2022) 13 pp. 4399-4399 [ Pubmed: 35931673 DOI: doi:10.1038/s41467-022-32019-3 ]
- Membrane protein (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Yn7756_1 fab (Complex from Mus musculus)
- Sars-cov-2 m protein dimer (long form) in complex with yn7756_1 fab (Complex)
- Yn7756_1 fab heavy chain (25 kDa, Protein from Mus musculus)
- Yn7756_1 fab light chain (24 kDa, Protein from Mus musculus)
- Membrane protein (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 M protein dimer (short form) in complex with YN7717_9 Fab
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7vgs
Q-score: 0.451
Zhang Z, Nomura N, Muramoto Y, Ekimoto T, Uemura T, Liu K, Yui M, Kono N, Aoki J, Ikeguchi M, Noda T, Iwata S, Ohto U, Shimizu T
Nat Commun (2022) 13 pp. 4399-4399 [ Pubmed: 35931673 DOI: doi:10.1038/s41467-022-32019-3 ]
- Membrane protein (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Yn7717_9 fab heavy chain (24 kDa, Protein from Mus musculus)
- Yn7717_9 fab (Complex from Mus musculus)
- Sars-cov-2 m protein dimer (short form) in complex with yn7717_9 fab (Complex)
- Membrane protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Yn7717_9 fab light chain (23 kDa, Protein from Mus musculus)
Cryo-EM reconstruction of equine apoferritin (unmodified)
Zhang Z, Shigematsu H, Shimizu T, Ohto U
Structure (2021) 29 pp. 1192-1199.e4 [ Pubmed: 34048698 DOI: doi:10.1016/j.str.2021.05.004 ]
Cryo-EM reconstruction of equine apoferritin (1 mM PEG4)
Zhang Z, Shigematsu H, Shimizu T, Ohto U
Structure (2021) 29 pp. 1192-1199.e4 [ Pubmed: 34048698 DOI: doi:10.1016/j.str.2021.05.004 ]
Cryo-EM reconstruction of equine apoferritin (1 mM PEG8)
Zhang Z, Shigematsu H, Shimizu T, Ohto U
Structure (2021) 29 pp. 1192-1199.e4 [ Pubmed: 34048698 DOI: doi:10.1016/j.str.2021.05.004 ]
Cryo-EM reconstruction of PEGylated tetrameric beta-amylase
Zhang Z, Shigematsu H, Shimizu T, Ohto U
Structure (2021) 29 pp. 1192-1199.e4 [ Pubmed: 34048698 DOI: doi:10.1016/j.str.2021.05.004 ]