Cryo-EM structure of the trimeric HerA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8yho
Q-score: 0.425
Cryo-EM structure of the trimeric HerA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8yhx
Q-score: 0.392
Zhen X, Zhou B, Liu Z, Wang X, Zhao H, Wu S, Li Z, Liang J, Zhang W, Zhu Q, He J, Xiong X, Ouyang S
Nat Commun (2024) 15 pp. 9269-9269 [ Pubmed: 39465277 DOI: doi:10.1038/s41467-024-53614-6 ]
- Cryo-em structure of the trimeric hera (Complex from Staphylococcus aureus)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Duf87 domain-containing protein (65 kDa, Protein from Staphylococcus aureus)
- Sir2 family protein (50 kDa, Protein from Staphylococcus aureus)
Cryo-EM structure of CRISPR-Csm effector complex from Mycobacterium canettii
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8wfx
Q-score: 0.39
Zhang H, Shi M, Ma X, Liu M, Wang N, Lu Q, Li Z, Zhao Y, Zhao H, Chen H, Zhang H, Jiang T, Ouyang S, Huo Y, Bi L
Int J Biol Macromol (2024) 260 pp. 129331-129331 [ DOI: doi:10.1016/j.ijbiomac.2024.129331 Pubmed: 38218299 ]
- Csm effector complex (Complex from Mycobacterium canettii)
- Rna (50-mer) (16 kDa, RNA from Mycobacterium canettii)
- Crispr system cms protein csm4 (32 kDa, Protein from Mycobacterium canettii)
- Crispr system cms protein csm5 (42 kDa, Protein from Mycobacterium canettii)
- Crispr system cms protein csm2 (15 kDa, Protein from Mycobacterium canettii)
- Crispr system single-strand-specific deoxyribonuclease cas10/csm1 (subtype iii-a) (91 kDa, Protein from Mycobacterium canettii)
- Crispr system cms endoribonuclease csm3 (25 kDa, Protein from Mycobacterium canettii)
The cryo-EM structure of the Mycobacterium tuberculosis CRISPR-Csm complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8x5d
Q-score: 0.547
Zhang H, Shi M, Ma X, Liu M, Wang N, Lu Q, Li Z, Zhao Y, Zhao H, Chen H, Zhang H, Jiang T, Ouyang S, Huo Y, Bi L
Int J Biol Macromol (2024) 260 pp. 129331-129331 [ DOI: doi:10.1016/j.ijbiomac.2024.129331 Pubmed: 38218299 ]
- Rna (47-mer) (59 kDa, RNA from Mycobacterium tuberculosis)
- Csm2 (Complex from Mycobacterium canettii)
- Crispr system cms endoribonuclease csm3 (26 kDa, Protein from Mycobacterium tuberculosis)
- Mycobacteria crispr-csm complexes (Complex from Mycobacterium tuberculosis)
- Csm2 (15 kDa, Protein from Mycobacterium canettii)
- Crispr system cms protein csm5 (42 kDa, Protein from Mycobacterium tuberculosis)
Cryo-EM structure of the prokaryotic SPARSA system complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jkz
Q-score: 0.475
Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S
Nat Commun (2024) 15 pp. 450-450 [ DOI: doi:10.1038/s41467-023-44660-7 Pubmed: 38200015 ]
- Ago (Complex)
- Sir2/ago (Complex from Geobacter sulfurreducens PCA)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- Sir2 (Complex from Geobacter sulfurreducens PCA)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Cryo-EM structure of the prokaryotic SPARSA system complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8jl0
Q-score: 0.547
Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S
Nat Commun (2024) 15 pp. 450-450 [ DOI: doi:10.1038/s41467-023-44660-7 Pubmed: 38200015 ]
- Ago (Complex)
- Dna (5'-d(p*ap*cp*gp*ap*cp*gp*tp*cp*tp*ap*ap*gp*ap*ap*ap*cp*cp*ap*tp*tp*ap*t)-3') (6 kDa, DNA from synthetic construct)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- Sir2 (Complex from Geobacter sulfurreducens PCA)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- The sir2/ago/guide rna/recognition dna complex (Complex from Geobacter sulfurreducens PCA)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
- Dna/guide rna duplex (Complex)
- Rna (5'-r(p*ap*up*ap*ap*up*gp*gp*up*up*up*cp*up*up*ap*gp*ap*cp*gp*up*cp*gp*u)-3') (6 kDa, RNA from synthetic construct)
Cryo-EM structure of Cas12g-sgRNA binary complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i3q
Q-score: 0.461
Liu M, Li Z, Chen J, Lin J, Lu Q, Ye Y, Zhang H, Zhang B, Ouyang S
PLoS Genet (2023) 19 pp. e1010930-e1010930 [ DOI: doi:10.1371/journal.pgen.1010930 Pubmed: 37729124 ]
- Cas12g-sgrna binary complex (Complex from Escherichia coli)
- Rna (Complex)
- Rna (139-mer) (44 kDa, RNA from Escherichia coli)
- Cas12g (Complex)
- Cas12g (89 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
Structure of the Spring Viraemia of Carp Virus ribonucleoprotein Complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7yg7
Q-score: 0.473
Wang ZX, Liu B, Yang T, Yu D, Zhang C, Zheng L, Xie J, Liu B, Liu M, Peng H, Lai L, Ouyang Q, Ouyang S, Zhang YA
J Virol (2023) 97 pp. e0182922-e0182922 [ DOI: doi:10.1128/jvi.01829-22 Pubmed: 36943056 ]
- Rna (99-mer) (30 kDa, RNA from Trichoplusia ni)
- Rna (Complex)
- Nucleoprotein (46 kDa, Protein from Sprivivirus cyprinus)
- Ribonucleoprotein complex of the spring viraemia carp virus (Complex from Sprivirus cyprinus)
- Nucleoprotein (Complex from Trichoplusia ni)
Cryo-EM structure of Sr35 resistosome induced by AvrSr35 R381A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7xx2
Q-score: 0.418
Zhao YB, Liu MX, Chen TT, Ma X, Li ZK, Zheng Z, Zheng SR, Chen L, Li YZ, Tang LR, Chen Q, Wang P, Ouyang S
Sci Adv (2022) 8 pp. eabq5108-eabq5108 [ Pubmed: 36083908 DOI: doi:10.1126/sciadv.abq5108 ]
- Avrsr35 (Complex from Puccinia graminis f.sp.tritici)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Avrsr35 (66 kDa, Protein from Puccinia graminis f. sp. tritici)
- Cnl9 (105 kDa, Protein from Triticum monococcum)
- Sr35 (Complex from Triticum monococcum)
- Sr35 resistosome (Complex)
Cryo-EM structure of plant NLR Sr35 resistosome
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7xe0
Q-score: 0.351
Zhao YB, Liu MX, Chen TT, Ma X, Li ZK, Zheng Z, Zheng SR, Chen L, Li YZ, Tang LR, Chen Q, Wang P, Ouyang S
Sci Adv (2022) 8 pp. eabq5108-eabq5108 [ Pubmed: 36083908 DOI: doi:10.1126/sciadv.abq5108 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Sr35 (105 kDa, Protein from Triticum monococcum)
- Sr35 (Complex from Triticum monococcum)
- Avrsr35 (66 kDa, Protein from Puccinia graminis f. sp. tritici)
- Avrsr35 (Complex from Puccinia graminis f. sp. tritici)
- Sr35 resistosome (Complex)