SARS-CoV-2 Spike S2 bound to Fab 54043-5
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8vcr
Q-score: 0.535
Johnson NV, Wall SC, Kramer KJ, Holt CM, Periasamy S, Richardson SI, Manamela NP, Suryadevara N, Andreano E, Paciello I, Pierleoni G, Piccini G, Huang Y, Ge P, Allen JD, Uno N, Shiakolas AR, Pilewski KA, Nargi RS, Sutton RE, Abu-Shmais AA, Parks R, Haynes BF, Carnahan RH, Crowe Jr JE, Montomoli E, Rappuoli R, Bukreyev A, Ross TM, Sautto GA, McLellan JS, Georgiev IS
Structure (2024) 32 pp. 1893- [ DOI: doi:10.1016/j.str.2024.08.022 Pubmed: 39326419 ]
- Trimeric s2 bound to fab 54043-5 (Complex)
- 54043-5 fab heavy chain (25 kDa, Protein from Homo sapiens)
- S2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 54043-5 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 54043-5 (Complex from Homo sapiens)
- Spike protein s2 (65 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7s6i
Q-score: 0.514
Torres JL, Ozorowski G, Andreano E, Liu H, Copps J, Piccini G, Donnici L, Conti M, Planchais C, Planas D, Manganaro N, Pantano E, Paciello I, Pileri P, Bruel T, Montomoli E, Mouquet H, Schwartz O, Sala C, De Francesco R, Wilson IA, Rappuoli R, Ward AB
PNAS (2022) 119 pp. e2120976119-e2120976119 [ DOI: doi:10.1073/pnas.2120976119 Pubmed: 35549549 ]
J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (conformation 3)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7s6j
Q-score: 0.376
Torres JL, Ozorowski G, Andreano E, Liu H, Copps J, Piccini G, Donnici L, Conti M, Planchais C, Planas D, Manganaro N, Pantano E, Paciello I, Pileri P, Bruel T, Montomoli E, Mouquet H, Schwartz O, Sala C, De Francesco R, Wilson IA, Rappuoli R, Ward AB
PNAS (2022) 119 pp. e2120976119-e2120976119 [ DOI: doi:10.1073/pnas.2120976119 Pubmed: 35549549 ]
- J08 fragment antigen binding heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- J08 fragment antigen binding light chain variable domain (11 kDa, Protein from Homo sapiens)
- J08 fragment antigen binding in complex with sars-2-cov-6p-mut2 s protein (690 kDa, Complex)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut2 S protein (conformation 2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7s6k
Q-score: 0.416
Torres JL, Ozorowski G, Andreano E, Liu H, Copps J, Piccini G, Donnici L, Conti M, Planchais C, Planas D, Manganaro N, Pantano E, Paciello I, Pileri P, Bruel T, Montomoli E, Mouquet H, Schwartz O, Sala C, De Francesco R, Wilson IA, Rappuoli R, Ward AB
PNAS (2022) 119 pp. e2120976119-e2120976119 [ DOI: doi:10.1073/pnas.2120976119 Pubmed: 35549549 ]
- J08 fragment antigen binding heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- J08 fragment antigen binding light chain variable domain (11 kDa, Protein from Homo sapiens)
- J08 fragment antigen binding in complex with sars-2-cov-6p-mut2 s protein (690 kDa, Complex)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (conformation 3)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7s6l
Q-score: 0.299
Torres JL, Ozorowski G, Andreano E, Liu H, Copps J, Piccini G, Donnici L, Conti M, Planchais C, Planas D, Manganaro N, Pantano E, Paciello I, Pileri P, Bruel T, Montomoli E, Mouquet H, Schwartz O, Sala C, De Francesco R, Wilson IA, Rappuoli R, Ward AB
PNAS (2022) 119 pp. e2120976119-e2120976119 [ DOI: doi:10.1073/pnas.2120976119 Pubmed: 35549549 ]
- J08 fragment antigen binding heavy chain variable domain (13 kDa, Protein from Homo sapiens)
- J08 fragment antigen binding in complex with sars-2-cov-6p-mut7 s protein (590 kDa, Complex)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- J08 fragment antigen binding light chain variable domain (11 kDa, Protein from Homo sapiens)
J08 fragment antigen binding in complex with Omicron SARS-CoV-2-6P S protein
Torres JL, Ozorowski G, Andreano E, Liu H, Copps J, Piccini G, Donnici L, Conti M, Planchais C, Planas D, Manganaro N, Pantano E, Paciello I, Pileri P, Bruel T, Montomoli E, Mouquet H, Schwartz O, Sala C, De Francesco R, Wilson IA, Rappuoli R, Ward AB
PNAS (2022) 119 pp. e2120976119-e2120976119 [ DOI: doi:10.1073/pnas.2120976119 Pubmed: 35549549 ]
- J08 fragment antigen binding light chain variable domain (Macromolecule from Homo sapiens)
- J08 fragment antigen binding heavy chain variable domain (Macromolecule from Homo sapiens)
- Omicron sars-cov-2-6p s protein (Macromolecule from Severe acute respiratory syndrome coronavirus 2)
- J08 fragment antigen binding in complex with omicron sars-cov-2-6p s protein (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-2 CoV 6P Mut7 in complex with Fab J08
Andreano E, Nicastri E, Paciello I, Pileri P, Manganaro N, Piccini G, Manenti A, Pantano E, Kabanova A, Troisi M, Vacca F, Cardamone D, De Santi C, Torres JL, Ozorowski G, Benincasa L, Jang H, Di Genova C, Depau L, Brunetti J, Agrati C, Capobianchi MR, Castilleti C, Emiliozzi A, Fabianni M, Montagnani F, Bracci L, Sautto G, Ross T, Mantomoli E, Temperton N, Ward AB, Sala C, Ippolito G, Rappuoli R
To Be Published
SARS-2 CoV 6P Mut7 in complex with Fab F05
Andreano E, Nicastri E, Paciello I, Pileri P, Manganaro N, Piccini G, Manenti A, Pantano E, Kabanova A, Troisi M, Vacca F, Cardamone D, De Santi C, Torres JL, Ozorowski G, Benincasa L, Jang H, Di Genova C, Depau L, Brunetti J, Agrati C, Capobianchi MR, Castilleti C, Emiliozzi A, Fabianni M, Montagnani F, Bracci L, Sautto G, Ross T, Mantomoli E, Temperton N, Ward AB, Sala C, Ippolito G, Rappuoli R
To Be Published
SARS-2 CoV 6P Mut 7 in complex with fragment antigen binding (fab) I14
Andreano E, Nicastri E, Paciello I, Pileri P, Manganaro N, Piccini G, Manenti A, Pantano E, Kabanova A, Troisi M, Vacca F, Cardamone D, De Santi C, Torres JL, Ozorowski G, Benincasa L, Jang H, Di Genova C, Depau L, Brunetti J, Agrati C, Capobianchi MR, Castilleti C, Emiliozzi A, Fabianni M, Montagnani F, Bracci L, Sautto G, Ross T, Mantomoli E, Temperton N, Ward AB, Sala C, Ippolito G, Rappuoli R
To Be Published