Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Water (18 Da, Ligand)
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Water (18 Da, Ligand)
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the second-step self-splicing
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7ygc
Q-score: 0.454
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*up*cp*g)-3') (911 Da, RNA from Tetrahymena thermophila)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena thermophila)
- Cryo-em structure of tetrahymena ribozyme conformation 4 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (5'-r(*cp*cp*cp*up*cp*up*up*ap*ap*cp*c)-3') (3 kDa, RNA from Tetrahymena thermophila)
Misfolded Tetrahymena ribozyme conformation 1
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7xsk
Q-score: 0.302
Li S, Palo MZ, Pintilie G, Zhang X, Su Z, Kappel K, Chiu W, Zhang K, Das R
PNAS (2022) 119 pp. e2209146119-e2209146119 [ Pubmed: 36067294 DOI: doi:10.1073/pnas.2209146119 ]
- Misfolded tetrahymena ribozyme conformation 1 (120 kDa, Complex from Tetrahymena thermophila)
- Rna (388-mer) (125 kDa, RNA from Tetrahymena thermophila)
Misfolded Tetrahymena ribozyme conformation 2
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7xsl
Q-score: 0.279
Li S, Palo MZ, Pintilie G, Zhang X, Su Z, Kappel K, Chiu W, Zhang K, Das R
PNAS (2022) 119 pp. e2209146119-e2209146119 [ Pubmed: 36067294 DOI: doi:10.1073/pnas.2209146119 ]
- Misfolded tetrahymena ribozyme conformation 2 (120 kDa, Complex from Tetrahymena thermophila)
- Rna (388-mer) (125 kDa, RNA from Tetrahymena thermophila)
Misfolded Tetrahymena ribozyme conformation 3
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 7xsm
Q-score: 0.261
Li S, Palo MZ, Pintilie G, Zhang X, Su Z, Kappel K, Chiu W, Zhang K, Das R
PNAS (2022) 119 pp. e2209146119-e2209146119 [ Pubmed: 36067294 DOI: doi:10.1073/pnas.2209146119 ]
- Misfolded tetrahymena ribozyme conformation 3 (120 kDa, Complex from Tetrahymena thermophila)
- Rna (388-mer) (125 kDa, RNA from Tetrahymena thermophila)
Native Tetrahymena ribozyme conformation
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7xsn
Q-score: 0.416
Li S, Palo MZ, Pintilie G, Zhang X, Su Z, Kappel K, Chiu W, Zhang K, Das R
PNAS (2022) 119 pp. e2209146119-e2209146119 [ Pubmed: 36067294 DOI: doi:10.1073/pnas.2209146119 ]
- Native tetrahymena ribozyme conformation (120 kDa, Complex from Tetrahymena thermophila)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
Apo L-21 ScaI Tetrahymena ribozyme
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7ez0
Q-score: 0.425
Holo L-16 ScaI Tetrahymena ribozyme
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7ez2
Q-score: 0.485
Su Z, Zhang K, Kappel K, Li S, Palo MZ, Pintilie GD, Rangan R, Luo B, Wei Y, Das R, Chiu W
Nature (2021) 596 pp. 603-607 [ DOI: doi:10.1038/s41586-021-03803-w Pubmed: 34381213 ]
- Magnesium ion (24 Da, Ligand)
- Holo l-16 scai tetrahymena ribozyme (126 kDa, RNA from Tetrahymena thermophila)
- Holo l-16 scai tetrahymena ribozyme s1 (2 kDa, RNA from Tetrahymena thermophila)
- Holo l-16 scai tetrahymena ribozyme s2 (1 kDa, RNA from Tetrahymena thermophila)
- Holo l-16 scai tetrahymena ribozyme with substrates s1 and s2, and metal ions. (Complex from Tetrahymena thermophila)