Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Water (18 Da, Ligand)
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Water (18 Da, Ligand)
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 7yc8
Q-score: 0.261
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cryo-em structure of tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (388-mer) (127 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7ycg
Q-score: 0.359
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]
- Rna (5'-r(*cp*cp*cp*up*cp*up*ap*ap*ap*cp*c)-3') (3 kDa, RNA from Tetrahymena)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7ych
Q-score: 0.373
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*cp*cp*cp*up*cp*up*ap*ap*ap*cp*c)-3') (3 kDa, RNA from Tetrahymena)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7yci
Q-score: 0.387
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]
- Magnesium ion (24 Da, Ligand)
- Rna (389-mer) (127 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna (5'-r(*cp*cp*cp*up*cp*u)-3') (1 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7yg8
Q-score: 0.419
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*up*cp*g)-3') (911 Da, RNA from Tetrahymena)
- Rna (387-mer) (127 kDa, RNA from Tetrahymena)
- Rna (5'-r(*cp*cp*cp*up*c)-3') (1 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7yg9
Q-score: 0.487
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*up*cp*gp*(ssu)p*ap*ap*c)-3') (2 kDa, RNA from Tetrahymena)
- Rna (391-mer) (127 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (5'-r(*cp*cp*cp*up*cp*u)-3') (1 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7yga
Q-score: 0.548
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena)
- Rna (5'-r(*up*cp*gp*(ssu)p*ap*ap*cp*c)-3') (2 kDa, RNA from Tetrahymena)
- Rna (5'-r(*cp*cp*cp*up*cp*u)-3') (1 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the second-step self-splicing
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 7ygb
Q-score: 0.498
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*up*cp*g)-3') (911 Da, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 3 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena)
- Rna (5'-r(*cp*cp*cp*up*cp*up*up*ap*ap*cp*c)-3') (3 kDa, RNA from Tetrahymena)