EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

primary_citation_author:"Pilsl M" AND database:"EMDB" AND xref_links:"go" AND resolution:[4 TO 5}

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-15135

Download Map 3D View

Human RNA polymerase I

Release date: Aug. 31, 2022
Resolution: 4.09 Å
EM Method: Single-particle
Fitted PDBs: 8a43
Q-score: 0.337

Daiss JL, Pilsl M, Straub K, Bleckmann A, Hocherl M, Heiss FB, Abascal-Palacios G, Ramsay EP, Tluckova K, Mars JC, Furtges T, Bruckmann A, Rudack T, Bernecky C, Lamour V, Panov K, Vannini A, Moss T, Engel C

Life Sci Alliance (2022) 5 [ Pubmed: 36271492 DOI: doi:10.26508/lsa.202201568 ]

Sample:

Dna-directed rna polymerase i subunit rpa2 (128 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase i subunit rpa34 (55 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase i subunit rpa49 (47 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase i subunit rpa1 (195 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
Rna polymerase i (Complex from Homo sapiens)

[Show more]

EMD-12906

Download Map 3D View Raw data

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Release date: Nov. 10, 2021
Resolution: 4.72 Å
EM Method: Single-particle
Fitted PDBs: 7ohr
Q-score: 0.317

Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P

PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]

Sample:

Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nuclear gtp-binding protein nug1 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
Ribosome biogenesis protein ytm1 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rrna-processing protein ebp2 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (cytosine(2870)-c(5))-methyltransferase (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar complex-associated protein 3 (75 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
27s pre-rrna (guanosine(2922)-2'-o)-methyltransferase (96 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein erb1 (91 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar protein 16 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-12907

Download Map 3D View Raw data

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Release date: Nov. 3, 2021
Resolution: 4.38 Å
EM Method: Single-particle
Fitted PDBs: 7ohs
Q-score: 0.28

Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P

PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]

Sample:

Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Protein mak16 (35 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome production factor 1 (35 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa1 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein erb1 (91 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar protein 16 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosomal rna-processing protein 1 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-12908

Download Map 3D View Raw data

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Release date: Nov. 3, 2021
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7oht
Q-score: 0.245

Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P

PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]

Sample:

5s rrna (38 kDa, RNA from Saccharomyces cerevisiae S288c)
Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Regulator of ribosome biosynthesis (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome assembly protein 4 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar gtp-binding protein 2 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nog1-tap associated immature ribosomal particles from cells depleted of rpl2. (Complex from Saccharomyces cerevisiae S288C)
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rpf2 (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-11904

Download Map 3D View

Apo Human RNA Polymerase III

Release date: Dec. 23, 2020
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7ast
Q-score: 0.24

Ramsay EP, Abascal-Palacios G, Daiss JL, King H, Gouge J, Pilsl M, Beuron F, Morris E, Gunkel P, Engel C, Vannini A

Nat Commun (2020) 11 pp. 6409-6409 [ Pubmed: 33335104 DOI: doi:10.1038/s41467-020-20262-5 ]

Sample:

Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc7-beta (3 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
Human rna polymerase iii (Complex from Homo sapiens)
Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)

[Show more]

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: