Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8s24
Q-score: 0.482
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- E3 ubiquitin-protein ligase rnf213 (596 kDa, Protein from Homo sapiens)
- Human rnf213 (590 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Human RNF213 (consensus refinement without accounting for flexibility)
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Human rnf213 (590 kDa, Complex from Homo sapiens)
Human RNF213: focused refinement of ATPase domain
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Human rnf213 (590 kDa, Complex from Homo sapiens)
Human RNF213: focused refinement of stalk domain
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Human rnf213 (590 kDa, Complex from Homo sapiens)
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Human rnf213 (590 kDa, Complex from Homo sapiens)
Human RNF213: focused refinement of E3 ligase domain
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Human rnf213 (590 kDa, Complex from Homo sapiens)
Human RNF213: focused refinement of E3-RING domain
Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow F
EMBO Rep (2024) 25 pp. 4979-5005 [ DOI: doi:10.1038/s44319-024-00280-w Pubmed: 39375464 ]
- Human rnf213 (590 kDa, Complex from Homo sapiens)