Bacteriophage SU10 virion (C1)
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 7z4b
Q-score: 0.194
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Putative tail tip fiber protein (35 kDa, Protein from Escherichia phage vB EcoP SU10)
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
- Adaptor (28 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative structural protein (29 kDa, Protein from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (32 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 7zpj
Q-score: -0.01
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Pre-dicing state of mouse somatic dicer with pre-mir-15a and tarbp2 (Complex)
- Risc-loading complex subunit tarbp2 isoform 1 (39 kDa, Protein from Mus musculus)
- 59-nt precursor of mir-15a (19 kDa, RNA from Mus musculus)
- Endoribonuclease dicer (226 kDa, Protein from Mus musculus)
- Pre-mir-15a (Complex from Mus musculus)
- Pre-dicing state of mouse somatic dicer with tarbp2 (Complex from Mus musculus)
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7z90
Q-score: 0.308
Prochazkova M, Fuzik T, Grybchuk D, Yurchenko V, Plevka P
Virology (2022) 577 pp. 149-154 [ Pubmed: 36371873 DOI: doi:10.1016/j.virol.2022.09.014 ]
- Capsid protein,major capsid protein (86 kDa, Protein from Leishmania RNA virus 1 - 4)
- Leishmania rna virus 1 - 4 (9 MDa, Virus from Leishmania RNA virus 1 - 4)
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7yym
Q-score: 0.192
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Endoribonuclease dicer (226 kDa, Protein from Mus musculus)
- Pre-mir-15a (Complex from synthetic construct)
- 59-nt precursor of mir-15a (19 kDa, RNA from synthetic construct)
- Pre-dicing state of mouse somatic dicer (Complex from Mus musculus)
- Pre-dicing state of mouse somatic dicer with pre-mir-15a (Complex)
Mammalian Dicer in the dicing state with pre-miR-15a substrate
Resolution: 6.21 Å
EM Method: Single-particle
Fitted PDBs: 7yyn
Q-score: 0.133
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Isoform 2 of endoribonuclease dicer (200 kDa, Protein from Mus musculus)
- 59-nt precursor of mir-15a (Complex from Mus musculus)
- Isoform 2 of endoribonuclease dicer (Complex from Mus musculus)
- 59-nt precursor of mir-15a (19 kDa, RNA from Mus musculus)
- Dicing state of mouse oocyte dicer with pre-mir-15a (Complex)
Mouse endoribonuclease Dicer (composite structure)
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7yz4
Q-score: 0.293
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Free form of mouse somatic dicer (Cellular component from Mus musculus)
- Endoribonuclease dicer (226 kDa, Protein from Mus musculus)
Mammalian Dicer in the "dicing state" with pre-miR-15a substrate
Resolution: 5.91 Å
EM Method: Single-particle
Fitted PDBs: 7zpi
Q-score: 0.106
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Dicing state of mouse somatic dicer (Complex from Mus musculus)
- 59-nt precursor of mir-15a (19 kDa, RNA from Mus musculus)
- Endoribonuclease dicer (226 kDa, Protein from Mus musculus)
- Dicing state of mouse somatic dicer with pre-mir-15a (Complex)
- Pre-mir-15a (Complex from Mus musculus)
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 7zpk
Q-score: 0.112
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Pre-dicing state of mouse somatic dicer with pre-mir-15a and tarbp2 (Complex)
- 59-nt precursor of mir-15a (19 kDa, RNA from Mus musculus)
- Endoribonuclease dicer (226 kDa, Protein from Mus musculus)
- Risc-loading complex subunit tarbp2 (39 kDa, Protein from Mus musculus)
- Pre-mir-15a (Complex from Mus musculus)
- Pre-dicing state of mouse somatic dicer with tarbp2 (Complex from Mus musculus)
The capsid of bacteriophage SU10.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7z49
Q-score: -0.007
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (27 MDa, Virus from Escherichia phage vB EcoP SU10)
Virion of Leishmania RNA virus 1
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 7ns2
Q-score: 0.463
Prochazkova M, Fuzik T, Grybchuk D, Yurchenko V, Plevka P
Virology (2022) 577 pp. 149-154 [ Pubmed: 36371873 DOI: doi:10.1016/j.virol.2022.09.014 ]
- Capsid protein (86 kDa, Protein from Leishmania RNA virus 1 - LgM5313)
- Leishmania rna virus 1 (9 MDa, Virus from Leishmania RNA virus 1)