Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7yym
Q-score: 0.192
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P
Mol Cell (2022) 82 pp. 4064-4079.e13 [ DOI: doi:10.1016/j.molcel.2022.10.010 Pubmed: 36332606 ]
- Endoribonuclease dicer (226 kDa, Protein from Mus musculus)
- Pre-mir-15a (Complex from synthetic construct)
- 59-nt precursor of mir-15a (19 kDa, RNA from synthetic construct)
- Pre-dicing state of mouse somatic dicer (Complex from Mus musculus)
- Pre-dicing state of mouse somatic dicer with pre-mir-15a (Complex)
The capsid of bacteriophage SU10.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7z49
Q-score: -0.007
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (27 MDa, Virus from Escherichia phage vB EcoP SU10)
Bacteriophage SU10 tail and bottom part of the capsid (C1)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7z4a
Q-score: 0.197
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (4 MDa, Virus from Escherichia phage vB EcoP SU10)
- Adaptor protein (28 kDa, Protein from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Tail of phage SU10 genome release intermediate
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7z4f
Q-score: 0.187
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative structural protein (29 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (3 MDa, Virus from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Adaptor protein (28 kDa, Protein from Escherichia phage vB EcoP SU10)
Bottom part (C5) of bacteriophage SU10 capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7z48
Q-score: 0.352
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Escherichia phage vb_ecop_su10 (655 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Native-like genome-containing particle of DWV in acidic pH
Skubnik K, Sukenik L, Buchta D, Fuzik T, Prochazkova M, Moravcova J, Smerdova L, Pridal A, Vacha R, Plevka P
Sci Adv (2021) 7 [ Pubmed: 33523856 DOI: doi:10.1126/sciadv.abd7130 ]
Native-like genome-containing particle of DWV in acidic pH
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7al3
Q-score: 0.26
Skubnik K, Sukenik L, Buchta D, Fuzik T, Prochazkova M, Moravcova J, Smerdova L, Pridal A, Vacha R, Plevka P
Sci Adv (2021) 7 [ Pubmed: 33523856 DOI: doi:10.1126/sciadv.abd7130 ]
- Deformed wing virus (Virus from Deformed wing virus)
- Genome polyprotein (28 kDa, Protein from Deformed wing virus)
- Genome polyprotein (46 kDa, Protein from Deformed wing virus)
- Genome polyprotein (28 kDa, Protein from Deformed wing virus)
Sacbrood virus of honeybee - expansion state I
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 6egx
Q-score: 0.381
Prochazkova M, Fuzik T, Skubnik K, Moravcova J, Ubiparip Z, Pridal A, Plevka P
PNAS (2018) 115 pp. 7759-7764 [ DOI: doi:10.1073/pnas.1722018115 Pubmed: 29987012 ]
- Minor capsid protein micp (3 kDa, Protein from Sacbrood virus)
- Structural protein vp3 (30 kDa, Protein from Sacbrood virus)
- Structural protein vp2 (22 kDa, Protein from Sacbrood virus)
- Sacbrood virus (Virus from Sacbrood virus)
- Structural protein vp1 (26 kDa, Protein from Sacbrood virus)