Structure of HKU1A RBD with TMPRSS2
Gao X, Zhu K, Wang L, Shang K, Hua L, Qin B, Zhu H, Ding W, Cui S
Cell Discov (2024) 10 pp. 84-84 [ Pubmed: 39112468 DOI: doi:10.1038/s41421-024-00717-5 ]
- Spike protein s1 (41 kDa, Protein from Candidatus Accumulibacter adiacens)
- Hku1a-rbd with tmprss2 receptor (Complex from Homo sapiens)
- Transmembrane protease serine 2 (42 kDa, Protein from Homo sapiens)
Structure of HKU1B RBD with TMPRSS2
Gao X, Zhu K, Wang L, Shang K, Hua L, Qin B, Zhu H, Ding W, Cui S
Cell Discov (2024) 10 pp. 84-84 [ Pubmed: 39112468 DOI: doi:10.1038/s41421-024-00717-5 ]
- Hku1b-rbd with tmprss2 receptor (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (31 kDa, Protein from Candidatus Accumulibacter adiacens)
- Transmembrane protease serine 2 (42 kDa, Protein from Homo sapiens)
Structure of enterovirus protease in complex host factor
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8x8q
Q-score: 0.544
Gao X, Wang B, Zhu K, Wang L, Qin B, Shang K, Ding W, Wang J, Cui S
Nat Commun (2024) 15 pp. 4176-4176 [ DOI: doi:10.1038/s41467-024-48504-w Pubmed: 38755176 ]
- 2a protein (fragment) (16 kDa, Protein from Enterovirus A71)
- Actin-histidine n-methyltransferase (67 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Enterovirus protease in complex host factor (Complex from Enterovirus A71)
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA tetramer (NADase active form)
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8it1
Q-score: 0.271
Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S
Nature (2024) 625 pp. 822-831 [ Pubmed: 37783228 DOI: doi:10.1038/s41586-023-06665-6 ]
- Piwi domain-containing protein (58 kDa, Protein from Thermoflavifilum thermophilum)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*ap*gp*u)-3') (6 kDa, RNA from synthetic construct)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Tir domain-containing protein (53 kDa, Protein from Thermoflavifilum thermophilum)
- The tetramer structural of prokaryotic argonaute with dna and rna complex (Complex from Thermoflavifilum thermophilum)
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA monomer
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8isz
Q-score: 0.321
Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S
Nature (2024) 625 pp. 822-831 [ Pubmed: 37783228 DOI: doi:10.1038/s41586-023-06665-6 ]
- The dimer structural of prokaryotic argonaute with dna and rna complex (Complex from Thermoflavifilum thermophilum)
- Piwi domain-containing protein (58 kDa, Protein from Thermoflavifilum thermophilum)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*ap*gp*u)-3') (6 kDa, RNA from synthetic construct)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Tir domain-containing protein (53 kDa, Protein from Thermoflavifilum thermophilum)
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-2)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8it0
Q-score: 0.397
Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S
Nature (2024) 625 pp. 822-831 [ Pubmed: 37783228 DOI: doi:10.1038/s41586-023-06665-6 ]
- Piwi domain-containing protein (58 kDa, Protein from Thermoflavifilum thermophilum)
- The dimer of prokaryotic argonaute system with dna and rna (Complex from Thermoflavifilum thermophilum)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*ap*gp*u)-3') (6 kDa, RNA from synthetic construct)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Tir domain-containing protein (53 kDa, Protein from Thermoflavifilum thermophilum)
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-1)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8k9g
Q-score: 0.404
Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S
Nature (2024) 625 pp. 822-831 [ Pubmed: 37783228 DOI: doi:10.1038/s41586-023-06665-6 ]
- Piwi domain-containing protein (58 kDa, Protein from Thermoflavifilum thermophilum)
- The dimer of prokaryotic argonaute system with dna and rna (Complex from Thermoflavifilum thermophilum)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*ap*gp*u)-3') (6 kDa, RNA from synthetic construct)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Tir domain-containing protein (53 kDa, Protein from Thermoflavifilum thermophilum)
Cryo-EM captures early ribosome assembly in action
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8c8x
Q-score: 0.318
Qin B, Lauer SM, Balke A, Vieira-Vieira CH, Burger J, Mielke T, Selbach M, Scheerer P, Spahn CMT, Nikolay R
Nat Commun (2023) 14 pp. 898-898 [ DOI: doi:10.1038/s41467-023-36607-9 Pubmed: 36797249 ]
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit precursor c-cp_h68 (Complex from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
Cryo-EM captures early ribosome assembly in action
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8c8y
Q-score: 0.439
Qin B, Lauer SM, Balke A, Vieira-Vieira CH, Burger J, Mielke T, Selbach M, Scheerer P, Spahn CMT, Nikolay R
Nat Commun (2023) 14 pp. 898-898 [ DOI: doi:10.1038/s41467-023-36607-9 Pubmed: 36797249 ]
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit precursor c-cp_l2/l28 (Complex from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)