Cryo-EM structure of CaRC-LH complex from Chloroflexus aurantiacus
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8ydm
Q-score: 0.491
Huang G, Dong S, Ma L, Li L, Ju J, Wang MJ, Zhang JP, Sui SF, Qin X
J Integr Plant Biol (2025) [ DOI: doi:10.1111/jipb.13853 Pubmed: 39912559 ]
- Gamma-carotene (536 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b-808/866 alpha chain (6 kDa, Protein from Chloroflexus aurantiacus J-10-fl)
- Cytochrome c-554 (45 kDa, Protein from Chloroflexus aurantiacus J-10-fl)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Reaction center protein m chain (34 kDa, Protein from Chloroflexus aurantiacus J-10-fl)
- Bacteriopheophytin a (889 Da, Ligand)
- 2-methyl-3-[(2e,6e,10e,14e,18e,22e,26e,30e,34e,38e)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione (921 Da, Ligand)
- Light-harvesting protein b-808/866 beta chain (6 kDa, Protein from Chloroflexus aurantiacus J-10-fl)
- Cryo-em structure of carc-lh complex from chloroflexus aurantiacus (Complex from Chloroflexus aurantiacus J-10-fl)
- Manganese (ii) ion (54 Da, Ligand)
- Reaction center protein l chain (35 kDa, Protein from Chloroflexus aurantiacus J-10-fl)
- Hypothetical protein chain n (6 kDa, Protein from Chloroflexus aurantiacus J-10-fl)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
Cryo-EM structure of the red-shifted Fittonia albivenis PSI-LHCI
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8wgh
Q-score: 0.665
Li X, Huang G, Zhu L, Hao C, Sui SF, Qin X
Nat Commun (2024) 15 pp. 6325-6325 [ DOI: doi:10.1038/s41467-024-50655-9 Pubmed: 39060282 ]
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Fittonia albivenis)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein 2 (28 kDa, Protein from Fittonia albivenis)
- Photosystem i iron-sulfur center (9 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit ii (21 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit xi (23 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit n (18 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit psak (13 kDa, Protein from Fittonia albivenis)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit vi (15 kDa, Protein from Fittonia albivenis)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein 4 (27 kDa, Protein from Fittonia albivenis)
- Photosystem i complex (Complex from Fittonia albivenis)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit viii (15 kDa, Protein from Fittonia albivenis)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Fittonia albivenis)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit iv (16 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Fittonia albivenis)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein 3 (29 kDa, Protein from Fittonia albivenis)
- Heptyl 1-thio-beta-d-glucopyranoside (294 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein 1 (26 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit o (15 kDa, Protein from Fittonia albivenis)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Fittonia albivenis)
Cryo-electron tomogram of mitochondria from cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
cryo-electron tomogram of mitochondria in cryo-FIB milled l-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
Cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]
cryo-electron tomogram of mitochondria in cryo-FIB milled s-Opa1* mouse embryonic fibroblasts
Fry MY, Navarro PP, Hakim P, Ananda VY, Qin X, Landoni JC, Rath S, Inde Z, Lugo CM, Luce BE, Ge Y, McDonald JL, Ali I, Ha LL, Kleinstiver BP, Chan DC, Sarosiek KA, Chao LH
EMBO J (2024) 43 pp. 391-413 [ Pubmed: 38225406 DOI: doi:10.1038/s44318-024-00027-2 ]