Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9es7
Q-score: 0.682
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: doi:10.1038/s41477-024-01804-x Pubmed: 39362993 ]
- Heme c (618 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from Spinacia oleracea)
- Water (18 Da, Ligand)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinacia oleracea)
- Cytochrome b6f complex incubated with decylplastoquinone (220 kDa, Complex from Spinacia oleracea)
- Undecyl-maltoside (496 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b6 (24 kDa, Protein from Spinacia oleracea)
- Cytochrome f (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinacia oleracea)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinacia oleracea)
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 9es8
Q-score: 0.626
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: doi:10.1038/s41477-024-01804-x Pubmed: 39362993 ]
- Heme c (618 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b6f complex with decylplastoquinol bound at quinone reduction site (220 kDa, Complex from Spinacia oleracea)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from Spinacia oleracea)
- Water (18 Da, Ligand)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinacia oleracea)
- Undecyl-maltoside (496 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Decylplastoquinone (276 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b6 (24 kDa, Protein from Spinacia oleracea)
- Cytochrome f (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinacia oleracea)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinacia oleracea)
Resolution: 2.33 Å
EM Method: Single-particle
Fitted PDBs: 9es9
Q-score: 0.618
Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A
Nat Plants (2024) 10 pp. 1814-1825 [ DOI: doi:10.1038/s41477-024-01804-x Pubmed: 39362993 ]
- Heme c (618 Da, Ligand)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from Spinacia oleracea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b6f complex inhibited with dbmib (2,5-dibromo-3-isopropyl-6-methylbenzo-1,4-quinone) (220 kDa, Complex from Spinacia oleracea)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from Spinacia oleracea)
- 2,5-dibromo-3-isopropyl-6-methylbenzo-1,4-quinone (321 Da, Ligand)
- Water (18 Da, Ligand)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinacia oleracea)
- Undecyl-maltoside (496 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b6 (24 kDa, Protein from Spinacia oleracea)
- Cytochrome f (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinacia oleracea)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinacia oleracea)
Cryo-EM structure of human Elp123 in complex with tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8ptx
Q-score: 0.441
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ DOI: doi:10.1038/s41467-024-48251-y Pubmed: 38750017 ]
- 5'-deoxyadenosine (251 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Methionine (149 Da, Ligand)
- Human elp123 in complex with glutamine trna, acetyl-coa, 5'-deoxyadenosine and methionine (635 kDa, Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Acetyl coenzyme *a (809 Da, Ligand)
- Trna gln (24 kDa, RNA from Homo sapiens)
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 8pty
Q-score: 0.487
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ DOI: doi:10.1038/s41467-024-48251-y Pubmed: 38750017 ]
- 5'-deoxyadenosine (251 Da, Ligand)
- Human elp123 in complex with 5'-deoxyadenosine and methionine (610 kDa, Complex from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Methionine (149 Da, Ligand)
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8ptz
Q-score: 0.386
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ DOI: doi:10.1038/s41467-024-48251-y Pubmed: 38750017 ]
- 5'-deoxyadenosine (251 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Methionine (149 Da, Ligand)
- S-ethyl-coa (795 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Trna gln (24 kDa, RNA from Homo sapiens)
- Human elp123 in complex with glutamine trna, s-ethyl-coa, 5'-deoxyadenosine and methionine (635 kDa, Complex from Homo sapiens)
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 8pu0
Q-score: 0.277
Abbassi NE, Jaciuk M, Scherf D, Bohnert P, Rau A, Hammermeister A, Rawski M, Indyka P, Wazny G, Chramiec-Glabik A, Dobosz D, Skupien-Rabian B, Jankowska U, Rappsilber J, Schaffrath R, Lin TY, Glatt S
Nat Commun (2024) 15 pp. 4094-4094 [ DOI: doi:10.1038/s41467-024-48251-y Pubmed: 38750017 ]
- 5'-deoxyadenosine (251 Da, Ligand)
- Human elp123 in complex with glutamine trna, desulpho-coa, 5'-deoxyadenosine and methionine (635 kDa, Complex from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Methionine (149 Da, Ligand)
- Trna gln (24 kDa, RNA from Homo sapiens)
- Elongator complex protein 2 (92 kDa, Protein from Homo sapiens)
- Elongator complex protein 1 (150 kDa, Protein from Homo sapiens)
- Desulfo-coenzyme a (735 Da, Ligand)
- Elongator complex protein 3 (65 kDa, Protein from Homo sapiens)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7qrm
Q-score: 0.617
Sarewicz M, Szwalec M, Pintscher S, Indyka P, Rawski M, Pietras R, Mielecki B, Koziej L, Jaciuk M, Glatt S, Osyczka A
Sci Adv (2023) 9 pp. eadd9688-eadd9688 [ DOI: doi:10.1126/sciadv.add9688 Pubmed: 36638176 ]
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Cytochrome b6-f complex subunit 7 (3 kDa, Protein from spinach)
- Heme c (618 Da, Ligand)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from spinach)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from spinach)
- Undecyl-maltoside (496 Da, Ligand)
- Cytochrome b6f complex (220 kDa, Complex from Spinacia oleracea)
- Cytochrome f (35 kDa, Protein from spinach)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from spinach)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b6 (24 kDa, Protein from spinach)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from spinach)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from spinach)
Resolution: 2.13 Å
EM Method: Single-particle
Fitted PDBs: 7zyv
Q-score: 0.644
Sarewicz M, Szwalec M, Pintscher S, Indyka P, Rawski M, Pietras R, Mielecki B, Koziej L, Jaciuk M, Glatt S, Osyczka A
Sci Adv (2023) 9 pp. eadd9688-eadd9688 [ DOI: doi:10.1126/sciadv.add9688 Pubmed: 36638176 ]
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Heme c (618 Da, Ligand)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from spinach)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from spinach)
- Undecyl-maltoside (496 Da, Ligand)
- Cytochrome b6f complex (220 kDa, Complex from Spinacia oleracea)
- Cytochrome f (35 kDa, Protein from spinach)
- Cytochrome b6-f complex subunit 7 (12 kDa, Protein from spinach)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from spinach)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b6 (24 kDa, Protein from spinach)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (24 kDa, Protein from spinach)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Thylakoid soluble phosphoprotein (10 kDa, Protein from spinach)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from spinach)
Cryo-EM structure of yeast Elp123 in complex with alanine tRNA
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8asw
Q-score: 0.403
Jaciuk M, Scherf D, Kaszuba K, Gaik M, Rau A, Koscielniak A, Krutyholowa R, Rawski M, Indyka P, Graziadei A, Chramiec-Glabik A, Biela A, Dobosz D, Lin TY, Abbassi NE, Hammermeister A, Rappsilber J, Kosinski J, Schaffrath R, Glatt S
Nucleic Acids Res (2023) 51 pp. 2011-2032 [ DOI: doi:10.1093/nar/gkac1232 Pubmed: 36617428 ]
- 5'-deoxyadenosine (251 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Elongator complex protein 3 (63 kDa, Protein from Saccharomyces cerevisiae)
- Alanine trna (23 kDa, RNA from Saccharomyces cerevisiae)
- Elongator complex protein 1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Elongator complex protein 2 (89 kDa, Protein from Saccharomyces cerevisiae)
- Yeast elp123 in complex with alanine trna (636 kDa, Complex from Saccharomyces cerevisiae)