Cyanide dihydratase from Bacillus pumilus C1
Resolution: 3.83 Å
EM Method: Helical reconstruction
Fitted PDBs: 8p4i
Q-score: 0.479
Mulelu AE, Reitz J, van Rooyen J, Scheffer M, Frangakis AS, Dlamini LS, Woodward JD, Benedik MJ, Sewell BT
To Be Published
- Cyanide dihydratase (35 kDa, Protein from Bacillus pumilus)
- Wildtype cyanide dihydratase from bacillus pumilus c1 (666 kDa, Complex from Bacillus pumilus)
Cyanide dihydratase from Bacillus pumilus C1 variant - Q86R,H305K,H308K,H323K
Resolution: 3.15 Å
EM Method: Helical reconstruction
Fitted PDBs: 8c5i
Q-score: 0.58
Mulelu AE, Reitz J, van Rooyen J, Scheffer M, Frangakis AS, Dlamini LS, Woodward JD, Benedik MJ, Sewell BT
To Be Published
Acinetobacter baumannii multidrug transporter AdeB in OOO state
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7b8p
Q-score: 0.495
Ornik-Cha A, Wilhelm J, Kobylka J, Sjuts H, Vargiu AV, Malloci G, Reitz J, Seybert A, Frangakis AS, Pos KM
Nat Commun (2021) 12 pp. 6919-6919 [ DOI: doi:10.1038/s41467-021-27146-2 Pubmed: 34824229 ]
Acinetobacter baumannii multidrug transporter AdeB in L*OO state
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7b8q
Q-score: 0.419
Ornik-Cha A, Wilhelm J, Kobylka J, Sjuts H, Vargiu AV, Malloci G, Reitz J, Seybert A, Frangakis AS, Pos KM
Nat Commun (2021) 12 pp. 6919-6919 [ Pubmed: 34824229 DOI: doi:10.1038/s41467-021-27146-2 ]
Resolution: 26.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7a7d
Q-score: 0.019
Sikora M, Ermel UH, Seybold A, Kunz M, Calloni G, Reitz J, Vabulas RM, Hummer G, Frangakis AS
PNAS (2020) 117 pp. 27132-27140 [ DOI: doi:10.1073/pnas.2004563117 Pubmed: 33067392 ]
- Desmocollin-2 (60 kDa, Protein from Homo sapiens)
- Desmosome from mouse liver (Cellular component from Homo sapiens)
- Desmoglein-2 (61 kDa, Protein from Homo sapiens)
Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 6ys3
Q-score: 0.568
Schulte L, Reitz J, Mao J, Sreeramulu S, Kudlinzki D, Hodirnau VV, Meier-Credo J, Saxena K, Buhr F, Langer J, Blackledge M, Glaubitz C, Frangakis A, Schwalbe H
Nat Commun (2020) [ ]
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal + gbc secm peptide complex (Complex)
- Gamma-crystallin b (7 kDa, Protein from Bos taurus)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BL21(DE3))
- Gbc secm peptide complex (Complex from Bos taurus)
- 5s rrna (38 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal (Complex from Escherichia coli BL21(DE3))
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BL21(DE3))
- Glycine-trna glyt (23 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli BL21(DE3))
- 23s rrna (942 kDa, RNA from Escherichia coli BL21(DE3))
Sub-tomogram average of the Nap adhesion complex from the human pathogen Mycoplasma genitalium.
Aparicio D, Scheffer MP, Marcos-Silva M, Vizarraga D, Sprankel L, Ratera M, Weber MS, Seybert A, Torres-Puig S, Gonzalez-Gonzalez L, Reitz J, Querol E, Pinol J, Pich OQ, Fita I, Frangakis AS
Nat Commun (2020) 11 pp. 2877-2877 [ DOI: doi:10.1038/s41467-020-16511-2 Pubmed: 32513917 ]
Aparicio D, Scheffer MP, Marcos-Silva M, Vizarraga D, Sprankel L, Ratera M, Weber MS, Seybert A, Torres-Puig S, Gonzalez-Gonzalez L, Reitz J, Querol E, Pinol J, Pich OQ, Fita I, Frangakis AS
Nat Commun (2020) 11 pp. 2877-2877 [ DOI: doi:10.1038/s41467-020-16511-2 Pubmed: 32513917 ]
cryo-electron density map of the P140-P110 heterodimer
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6yrk
Q-score: 0.206
Aparicio D, Scheffer MP, Marcos-Silva M, Vizarraga D, Sprankel L, Ratera M, Weber MS, Seybert A, Torres-Puig S, Gonzalez-Gonzalez L, Reitz J, Querol E, Pinol J, Pich OQ, Fita I, Frangakis AS
Nat Commun (2020) 11 pp. 2877-2877 [ DOI: doi:10.1038/s41467-020-16511-2 Pubmed: 32513917 ]
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 6qdw
Q-score: 0.541
Schulte L, Mao J, Reitz J, Sreeramulu S, Kudlinzki D, Hodirnau VV, Meier-Credo J, Saxena K, Buhr F, Langer JD, Blackledge M, Frangakis AS, Glaubitz C, Schwalbe H
Nat Commun (2020) 11 pp. 5569-5569 [ Pubmed: 33149120 DOI: doi:10.1038/s41467-020-19372-x ]
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- Gbc secm peptide (Complex from Bos taurus)
- Gamma-crystallin b (7 kDa, Protein from Bos taurus)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal + gbc secm peptide complex (Complex)
- 50 ribosomal subunit (Complex from Escherichia coli BL21(DE3))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 5s rrna (38 kDa, RNA from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- Glycine-trna glyt (23 kDa, RNA from Escherichia coli (strain B / BL21-DE3))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- 23s rrna (942 kDa, RNA from Escherichia coli BL21(DE3))