cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7kmk
Q-score: 0.191
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kml
Q-score: 0.23
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein in complex with Fab 15033-7, 3-"up", asymmetric
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 7kxj
Q-score: 0.113
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Homo sapiens)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein in complex with Fab 15033-7, 2-"up"-1-"down" conformation
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7kxk
Q-score: 0.118
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Homo sapiens)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)