Structural insights into unique features of the human mitochondrial ribosome recycling
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nu2
Q-score: 0.246
Koripella RK, Sharma MR, Risteff P, Keshavan P, Agrawal RK
PNAS (2019) 116 pp. 8283-8288 [ DOI: doi:10.1073/pnas.1815675116 Pubmed: 30962385 ]
- 28s ribosomal protein s22, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l46, mitochondrial (27 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (3 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (10 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (45 kDa, Protein from Homo sapiens)
- 12s rrna (296 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (16 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (13 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (14 kDa, Protein from Homo sapiens)
- Structural insights into unique features of the human mitochondrial ribosome bound with mtrrf -class-1 (Complex from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (32 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (5 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (38 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l51, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (12 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (18 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (26 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (10 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (6 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (9 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (31 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (9 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (18 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l36, mitochondrial (4 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (28 kDa, Protein from Homo sapiens)
- Ribosome-recycling factor, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (5 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (42 kDa, Protein from Homo sapiens)
- Aurora kinase a-interacting protein (8 kDa, Protein from Homo sapiens)
- 16s rrna (472 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (41 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (13 kDa, Protein from Homo sapiens)
- E-site trna (589 Da, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s29, mitochondrial (39 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (32 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l19, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (34 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (11 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (50 kDa, Protein from Homo sapiens)
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (16 kDa, Protein from Homo sapiens)
- Mt-trnaval (17 kDa, RNA from Homo sapiens)
Structural insights into unique features of the human mitochondrial ribosome recycling
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6nu3
Q-score: 0.095
Koripella RK, Sharma MR, Risteff P, Keshavan P, Agrawal RK
PNAS (2019) 116 pp. 8283-8288 [ DOI: doi:10.1073/pnas.1815675116 Pubmed: 30962385 ]
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- 12s rrna (296 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (26 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial,ms39 (50 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- Cdna flj61100, highly similar to 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 16s rrna (472 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- E-site trna (589 Da, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l19, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- Mt-trnaval (17 kDa, RNA from Homo sapiens)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 6neq
Q-score: 0.247
Koripella RK, Sharma MR, Haque ME, Risteff P, Spremulli LL, Agrawal RK
iScience (2019) 12 pp. 76-86 [ Pubmed: 30677741 DOI: doi:10.1016/j.isci.2018.12.030 ]
- 28s ribosomal protein s27, mitochondrial (48 kDa, Protein from Bos taurus)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Bos taurus)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Bos taurus)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Bos taurus)
- Dap3 protein (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18c, mitochondrial (16 kDa, Protein from Bos taurus)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Bos taurus)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Bos taurus)
- 28s ribosomal protein s5, mitochondrial (47 kDa, Protein from Bos taurus)
- 28s ribosomal protein s22, mitochondrial (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Bos taurus)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Bos taurus)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Bos taurus)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Bos taurus)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Bos taurus)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal rna, mitochondrial (306 kDa, RNA from Bos taurus)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (60 kDa, Protein from Bos taurus)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Bos taurus)
- Translation initiation factor if-3, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Bos taurus)
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6nf8
Q-score: 0.312
Koripella RK, Sharma MR, Haque ME, Risteff P, Spremulli LL, Agrawal RK
iScience (2019) 12 pp. 76-86 [ Pubmed: 30677741 DOI: doi:10.1016/j.isci.2018.12.030 ]
- 28s ribosomal protein s27, mitochondrial (48 kDa, Protein from Bos taurus)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Bos taurus)
- 28s ribosomal rna, mitochondria (306 kDa, RNA from Bos taurus)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Bos taurus)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Bos taurus)
- Dap3 protein (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18c, mitochondrial (16 kDa, Protein from Bos taurus)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Bos taurus)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Bos taurus)
- 28s ribosomal protein s5, mitochondrial (47 kDa, Protein from Bos taurus)
- 28s ribosomal protein s22, mitochondrial (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Bos taurus)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Bos taurus)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Bos taurus)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Bos taurus)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Bos taurus)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Bos taurus)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (60 kDa, Protein from Bos taurus)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Bos taurus)
- Translation initiation factor if-3, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Bos taurus)