Rat alpha5beta1 integrin, headpiece
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8oxz
Q-score: 0.293
Shafaq-Zadah M, Dransart E, Wunder C, Chambon V, Valades-Cruz CA, Leconte L, Sarangi NK, Robinson J, Bai S-K, Regmi R, Di Cicco A, Hovasse A, Bartels R, Nilsson UJ, Cianferani-Sanglier S, Leffler H, Keyes TE, Levy D, Raunser S, Roderer D, Johannes L
To Be Published
- Integrin beta-1 (88 kDa, Protein from Rattus norvegicus)
- Integrin subunit alpha 5 (119 kDa, Protein from Rattus norvegicus)
- Alpha5beta1 integrin from rattus norvegicus (Complex from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of P. luminescens TccC3-F-actin complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7z7h
Q-score: 0.366
Belyy A, Lindemann F, Roderer D, Funk J, Bardiaux B, Protze J, Bieling P, Oschkinat H, Raunser S
Nat Commun (2022) 13 pp. 4202-4202 [ Pubmed: 35858890 DOI: doi:10.1038/s41467-022-31836-w ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nicotinamide (122 Da, Ligand)
- Structure of p. luminescence tccc3-f-actin complex (Complex from Photorhabdus luminescens)
- Magnesium ion (24 Da, Ligand)
- Actin, alpha skeletal muscle (42 kDa, Protein from rabbit)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Maltose/maltodextrin-binding periplasmic protein,tccc3 (63 kDa, Protein from Photorhabdus luminescens)
Structure of ADP-ribosylated F-actin
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7z7i
Q-score: 0.444
Belyy A, Lindemann F, Roderer D, Funk J, Bardiaux B, Protze J, Bieling P, Oschkinat H, Raunser S
Nat Commun (2022) 13 pp. 4202-4202 [ Pubmed: 35858890 DOI: doi:10.1038/s41467-022-31836-w ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Structure of adp-ribosylated f-actin (Complex from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Actin, alpha skeletal muscle (42 kDa, Protein from rabbit)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
Structure of Photorhabdus luminescens Tc holotoxin pore, Mutation TccC3-D651A
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6sue
Q-score: 0.385
Roderer D, Hofnagel O, Benz R, Raunser S
PNAS (2019) 116 pp. 23083-23090 [ DOI: doi:10.1073/pnas.1909821116 Pubmed: 31666324 ]
- Tcdb2,tccc3 (274 kDa, Protein from Photorhabdus luminescens)
- Tc holotoxin composed of the tcda1 pentamer and tcdb2-tccc3 (1 MDa, Complex from Photorhabdus luminescens)
- Tcda1 (283 kDa, Protein from Photorhabdus luminescens)
Structure of Photorhabdus luminescens Tc holotoxin pore
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6suf
Q-score: 0.396
Roderer D, Hofnagel O, Benz R, Raunser S
PNAS (2019) 116 pp. 23083-23090 [ DOI: doi:10.1073/pnas.1909821116 Pubmed: 31666324 ]
- Tc holotoxin complex in the pore form, formed by the tcda1 pentamer and tcdb2-tccc3 (1 MDa, Complex from Photorhabdus luminescens)
- Tcdb2,tccc3 (274 kDa, Protein from Photorhabdus luminescens)
- Tcda1 (283 kDa, Protein from Photorhabdus luminescens)
PTC3 holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 6h6e
Q-score: 0.371
Gatsogiannis C, Merino F, Roderer D, Balchin D, Schubert E, Kuhlee A, Hayer-Hartl M, Raunser S
Nature (2018) 563 pp. 209-213 [ DOI: doi:10.1038/s41586-018-0556-6 Pubmed: 30232455 ]
- Tcdb2,tccc3 (273 kDa, Protein from Photorhabdus luminescens)
- Ptc3 holotoxin complex in prepore state (5 x tcda1, 1 x tcdb2, 1 x tccc3) (Complex from Photorhabdus luminescens)
- Tcda1 (283 kDa, Protein from Photorhabdus luminescens)
- Tcdb2/tccc3 (Complex from Photorhabdus luminescens)
- Tcda1 (Complex from Photorhabdus luminescens)
PTC3 holotoxin complex from Photorhabdus luminiscens - Mutant TcC-D651A
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 6h6f
Q-score: 0.375
Gatsogiannis C, Merino F, Roderer D, Balchin D, Schubert E, Kuhlee A, Hayer-Hartl M, Raunser S
Nature (2018) 563 pp. 209-213 [ DOI: doi:10.1038/s41586-018-0556-6 Pubmed: 30232455 ]
- Ptc3 holotoxin complex in prepore state - mutant tcc-d651a (1 MDa, Complex)
- Tcdb2,tccc3,tccc3 (273 kDa, Protein from Photorhabdus luminescens)
- Tcda1 (283 kDa, Protein from Photorhabdus luminescens)
- Tcda1 (Complex from Photorhabdus luminescens)
- Tcdb2/tccc3-d651a (Complex from Photorhabdus luminescens)