SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-57
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8cxn
Q-score: 0.354
Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y
Cell Rep (2022) 39 pp. 111004-111004 [ DOI: doi:10.1016/j.celrep.2022.111004 Pubmed: 35738279 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Pan-sarbecovirus nanobody 2-57 (14 kDa, Protein from Lama glama)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein with psnb 2-34 bound (Complex from Lama glama)
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-34
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8cy7
Q-score: 0.33
Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y
Cell Rep (2022) 39 pp. 111004-111004 [ DOI: doi:10.1016/j.celrep.2022.111004 Pubmed: 35738279 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Pan-sarbecovirus nanobody 2-38 (13 kDa, Protein from Lama glama)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein with psnb 2-34 bound (Complex from Lama glama)
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-67
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8cya
Q-score: 0.352
Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y
Cell Rep (2022) 39 pp. 111004-111004 [ DOI: doi:10.1016/j.celrep.2022.111004 Pubmed: 35738279 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Pan-sarbecovirus nanobody 2-67 (14 kDa, Protein from Lama glama)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein with psnb 2-65 bound (Complex from Lama glama)
SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-8
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8cyb
Q-score: 0.353
Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y
Cell Rep (2022) 39 pp. 111004-111004 [ DOI: doi:10.1016/j.celrep.2022.111004 Pubmed: 35738279 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein with psnb 1-8 bound (Complex from Lama glama)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Pan-sarbecovirus nanobody 1-8 (14 kDa, Protein from Lama glama)
- 1-deoxy-alpha-d-mannopyranose (164 Da, Ligand)
CryoEM structure of SARS-CoV-2 RBD in complex with nanobodies Nb21 and Nb105
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 7mdw
Q-score: 0.226
Sun D, Sang Z, Kim YJ, Xiang Y, Cohen T, Belford AK, Huet A, Conway JF, Sun J, Taylor DJ, Schneidman-Duhovny D, Zhang C, Huang W, Shi Y
Nat Commun (2021) 12 pp. 4676- [ DOI: doi:10.1038/s41467-021-24963-3 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanobody nb105 (13 kDa, Protein from Lama glama)
- Nonobody nb21 (12 kDa, Protein from Lama glama)
- Cryoem map of sars-cov-2 rbd in complex with nb21 and nb105 (Complex from Severe acute respiratory syndrome coronavirus 2)