Negative stain EM map of SUDV GPdMuc in complex with EA97
Wang Y, Howell KA, Brannan J, Agans KN, Turner HL, Wirchnianski AS, Kailasan S, Fusco M, Galkin A, Chiang CI, Zhao X, Saphire EO, Chandran K, Ward AB, Dye JM, Aman MJ, Geisbert TW, Li Y
J Virol (2021) [ Pubmed: 33536172 DOI: doi:10.1128/JVI.01907-20 ]
Negative stain EM map of SUDV GPdMuc in complex with EB46 Fab
Wang Y, Howell KA, Brannan J, Agans KN, Turner HL, Wirchnianski AS, Kailasan S, Fusco M, Galkin A, Chiang CI, Zhao X, Saphire EO, Chandran K, Ward AB, Dye JM, Aman MJ, Geisbert TW, Li Y
J Virol (2021) [ Pubmed: 33536172 DOI: doi:10.1128/JVI.01907-20 ]
EBOV GPdTM (Mayinga) in complex with rEBOV-548 Fab
Gilchuk P, Murin CD, Milligan JC, Cross RW, Mire CE, Ilinykh PA, Huang K, Kuzmina N, Altman PX, Hui S, Gunn BM, Bryan AL, Davidson E, Doranz BJ, Turner HL, Alkutkar T, Flinko R, Orlandi C, Carnahan R, Nargi R, Bombardi RG, Vodzak ME, Li S, Okoli A, Ibeawuchi M, Ohiaeri B, Lewis GK, Alter G, Bukreyev A, Saphire EO, Geisbert TW, Ward AB, Crowe Jr JE
Immunity (2020) 52 pp. 388-403.e12 [ Pubmed: 32023489 DOI: doi:10.1016/j.immuni.2020.01.001 ]
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 6pci
Q-score: 0.38
Gilchuk P, Murin CD, Milligan JC, Cross RW, Mire CE, Ilinykh PA, Huang K, Kuzmina N, Altman PX, Hui S, Gunn BM, Bryan AL, Davidson E, Doranz BJ, Turner HL, Alkutkar T, Flinko R, Orlandi C, Carnahan R, Nargi R, Bombardi RG, Vodzak ME, Li S, Okoli A, Ibeawuchi M, Ohiaeri B, Lewis GK, Alter G, Bukreyev A, Saphire EO, Geisbert TW, Ward AB, Crowe Jr JE
Immunity (2020) 52 pp. 388-403.e12 [ Pubmed: 32023489 DOI: doi:10.1016/j.immuni.2020.01.001 ]
- Virion spike glycoprotein,virion spike glycoprotein,ebola virus (makona) gp2 (22 kDa, Protein from Ebola virus)
- Rebov-520 fab (Complex)
- Ebov gpdmuc (makona) in complex with rebov-520 and rebov-548 fabs (450 kDa, Complex from Homo sapiens)
- Rebov-520 fab light chain (23 kDa, Protein from Homo sapiens)
- Rebov-520 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Ebola virus (makona) gp (Complex)
- Virion spike glycoprotein (31 kDa, Protein from Ebola virus)
- Rebov-548 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Rebov-548 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rebov-548 fab (Complex)
EBOV GPdMuc Makona bound to rEBOV-548 Fab
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 6uye
Q-score: 0.413
Gilchuk P, Murin CD, Milligan JC, Cross RW, Mire CE, Ilinykh PA, Huang K, Kuzmina N, Altman PX, Hui S, Gunn BM, Bryan AL, Davidson E, Doranz BJ, Turner HL, Alkutkar T, Flinko R, Orlandi C, Carnahan R, Nargi R, Bombardi RG, Vodzak ME, Li S, Okoli A, Ibeawuchi M, Ohiaeri B, Lewis GK, Alter G, Bukreyev A, Saphire EO, Geisbert TW, Ward AB, Crowe Jr JE
Immunity (2020) 52 pp. 388-403.e12 [ Pubmed: 32023489 DOI: doi:10.1016/j.immuni.2020.01.001 ]
- Ebola virus, mucin deleted, strain makona (Complex from Ebola virus)
- Sgp (29 kDa, Protein from Ebola virus)
- Virion spike glycoprotein (10 kDa, Protein from Ebola virus)
- Complex of ebola virus, mucin deleted, strain makona in complex with rebov-548 fab (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody rebov-548 fab, heavy chain (14 kDa, Protein from Homo sapiens)
- Rebov-548 fab (Complex from Homo sapiens)
- Antibody rebov-548 fab, light chain (11 kDa, Protein from Homo sapiens)
Ebola virus nucleoprotein - RNA complex
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 6nut
Q-score: 0.516
Kirchdoerfer RN, Saphire EO, Ward AB
Acta Crystallogr F Struct Biol Commun (2019) 75 pp. 340-347 [ Pubmed: 31045563 DOI: doi:10.1107/S2053230X19004424 ]
- Nucleoprotein (50 kDa, Protein from Zaire ebolavirus (strain Mayinga-76))
- Rna (5'-r(p*ap*ap*ap*ap*ap*a)-3') (1 kDa, RNA from Homo sapiens)
- Ebola virus nucleoprotein bound to rna (177 MDa, Complex from Ebola virus - Mayinga, Zaire, 1976)
Negative stain EM map of Pan-EBOV antibody 520 Fab in complex with EBOV GPdMuc trimer
Gilchuk P, Kuzmina N, Ilinykh PA, Huang K, Gunn BM, Bryan A, Davidson E, Doranz BJ, Turner HL, Fusco ML, Bramble MS, Hoff NA, Binshtein E, Kose N, Flyak AI, Flinko R, Orlandi C, Carnahan R, Parrish EH, Sevy AM, Bombardi RG, Singh PK, Mukadi P, Muyembe-Tamfum JJ, Ohi MD, Saphire EO, Lewis GK, Alter G, Ward AB, Rimoin AW, Bukreyev A, Crowe Jr JE
Immunity (2018) 49 pp. 363-374.e10 [ DOI: doi:10.1016/j.immuni.2018.06.018 Pubmed: 30029854 ]
Negative stain EM map of Pan-EBOV antibody 515 Fab in complex with EBOV GPdMuc trimer
Gilchuk P, Kuzmina N, Ilinykh PA, Huang K, Gunn BM, Bryan A, Davidson E, Doranz BJ, Turner HL, Fusco ML, Bramble MS, Hoff NA, Binshtein E, Kose N, Flyak AI, Flinko R, Orlandi C, Carnahan R, Parrish EH, Sevy AM, Bombardi RG, Singh PK, Mukadi P, Muyembe-Tamfum JJ, Ohi MD, Saphire EO, Lewis GK, Alter G, Ward AB, Rimoin AW, Bukreyev A, Crowe Jr JE
Immunity (2018) 49 pp. 363-374.e10 [ DOI: doi:10.1016/j.immuni.2018.06.018 Pubmed: 30029854 ]
VIC170 Fab in complex with Ebola virus GP
Saphire EO, Schendel SL, Fusco ML, Gangavarapu K, Gunn BM, Wec AZ, Halfmann PJ, Brannan JM, Herbert AS, Qiu X, Wagh K, He S, Giorgi EE, Theiler J, Pommert KBJ, Krause TB, Turner HL, Murin CD, Pallesen J, Davidson E, Ahmed R, Aman MJ, Bukreyev A, Burton DR, Crowe Jr. JE, Davis CW, Georgiou G, Krammer F, Kyratsous CA, Lai JR, Nykiforuk C, Pauly MH, Rijal P, Takada A, Townsend AR, Volchkov V, Walker LM, Wang CI, Zeitlin L, Doranz BJ, Ward AB, Korber B, Kobinger GP, Andersen KG, Kawaoka Y, Alter G, Chandran K, Dye JM
Cell (2018) 174 pp. 938-952.e13 [ Pubmed: 30096313 DOI: doi:10.1016/j.cell.2018.07.033 ]
VIC169 Fab in complex with Ebola virus GP
Saphire EO, Schendel SL, Fusco ML, Gangavarapu K, Gunn BM, Wec AZ, Halfmann PJ, Brannan JM, Herbert AS, Qiu X, Wagh K, He S, Giorgi EE, Theiler J, Pommert KBJ, Krause TB, Turner HL, Murin CD, Pallesen J, Davidson E, Ahmed R, Aman MJ, Bukreyev A, Burton DR, Crowe Jr. JE, Davis CW, Georgiou G, Krammer F, Kyratsous CA, Lai JR, Nykiforuk C, Pauly MH, Rijal P, Takada A, Townsend AR, Volchkov V, Walker LM, Wang CI, Zeitlin L, Doranz BJ, Ward AB, Korber B, Kobinger GP, Andersen KG, Kawaoka Y, Alter G, Chandran K, Dye JM
Cell (2018) 174 pp. 938-952.e13 [ Pubmed: 30096313 DOI: doi:10.1016/j.cell.2018.07.033 ]