Chimeric Adenovirus-derived dodecamer
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8qbx
Q-score: 0.707
Buzas D, Sun H, Toelzer C, Yadav SKN, Borucu U, Gautam G, Gupta K, Bufton JC, Capin J, Sessions RB, Garzoni F, Berger I, Schaffitzel C
Structure (2024) 32 pp. 342- [ DOI: doi:10.1016/j.str.2023.12.010 Pubmed: 38198950 ]
- Unidentified adenovirus (Virus from unidentified adenovirus)
- Penton protein (63 kDa, Protein from Human adenovirus sp.)
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8c9n
Q-score: 0.544
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ DOI: doi:10.1093/abt/tbad024 Pubmed: 38075238 ]
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ DOI: doi:10.1093/abt/tbad024 Pubmed: 38075238 ]
- Addocov-adah11 (Complex from Human adenovirus B3)
- Adah11 (Complex from Lama glama)
Hutchins GH, Noble CEM, Bunzel HA, Williams C, Dubiel P, Yadav SKN, Molinaro PM, Barringer R, Blackburn H, Hardy BJ, Parnell AE, Landau C, Race PR, Oliver TAA, Koder RL, Crump MP, Schaffitzel C, Oliveira ASF, Mulholland AJ, Anderson JLR
PNAS (2023) 120 pp. e2306046120-e2306046120 [ DOI: doi:10.1073/pnas.2306046120 Pubmed: 37487099 ]
- Holo e4d2 (Complex from synthetic construct)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8f2r
Q-score: 0.381
Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Yadav SKN, Ross J, Borucu U, Palmer CS, Chen KE, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ
Cell (2023) 186 pp. 2219-2237.e29 [ DOI: doi:10.1016/j.cell.2023.04.003 Pubmed: 37172566 ]
- Comm domain-containing protein 7 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 1 (20 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 10 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 6 (8 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 3 (22 kDa, Protein from Homo sapiens)
- Human ccc complex (Complex from Homo sapiens)
- Comm domain-containing protein 4 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 2 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 9 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 5 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 8 (20 kDa, Protein from Homo sapiens)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8f2u
Q-score: 0.408
Healy MD, McNally KE, Butkovic R, Chilton M, Kato K, Sacharz J, McConville C, Moody ERR, Shaw S, Planelles-Herrero VJ, Yadav SKN, Ross J, Borucu U, Palmer CS, Chen KE, Croll TI, Hall RJ, Caruana NJ, Ghai R, Nguyen THD, Heesom KJ, Saitoh S, Berger I, Schaffitzel C, Williams TA, Stroud DA, Derivery E, Collins BM, Cullen PJ
Cell (2023) 186 pp. 2219-2237.e29 [ DOI: doi:10.1016/j.cell.2023.04.003 Pubmed: 37172566 ]
- Comm domain-containing protein 8 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 5 (28 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 10 (24 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 7 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 1 (21 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 22 (70 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 3 (22 kDa, Protein from Homo sapiens)
- Human ccc complex (Complex from Homo sapiens)
- Coiled-coil domain-containing protein 93 (73 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 2 (22 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 4 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 9 (21 kDa, Protein from Homo sapiens)
- Comm domain-containing protein 6 (9 kDa, Protein from Homo sapiens)
SARS CoV Spike protein, Closed C3 conformation
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 7zh1
Q-score: 0.638
Toelzer C, Gupta K, Yadav SKN, Hodgson L, Williamson MK, Buzas D, Borucu U, Powers K, Stenner R, Vasileiou K, Garzoni F, Fitzgerald D, Payre C, Gautam G, Lambeau G, Davidson AD, Verkade P, Frank M, Berger I, Schaffitzel C
Sci Adv (2022) 8 pp. eadc9179-eadc9179 [ Pubmed: 36417532 DOI: doi:10.1126/sciadv.adc9179 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (138 kDa, Protein from Enterobacteria phage T4)
- Sars cov spike protein, closed conformation, c3 symmetry (414 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- Linoleic acid (280 Da, Ligand)
SARS CoV Spike protein, Closed C1 conformation
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 7zh2
Q-score: 0.63
Toelzer C, Gupta K, Yadav SKN, Hodgson L, Williamson MK, Buzas D, Borucu U, Powers K, Stenner R, Vasileiou K, Garzoni F, Fitzgerald D, Payre C, Gautam G, Lambeau G, Davidson AD, Verkade P, Frank M, Berger I, Schaffitzel C
Sci Adv (2022) 8 pp. eadc9179-eadc9179 [ Pubmed: 36417532 DOI: doi:10.1126/sciadv.adc9179 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars cov spike protein, closed conformation, c1 symmetry (414 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- Spike glycoprotein,fibritin (136 kDa, Protein from Tequatrovirus T4)
- Linoleic acid (280 Da, Ligand)
SARS CoV Spike protein, Open conformation
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7zh5
Q-score: 0.529
Toelzer C, Gupta K, Yadav SKN, Hodgson L, Williamson MK, Buzas D, Borucu U, Powers K, Stenner R, Vasileiou K, Garzoni F, Fitzgerald D, Payre C, Gautam G, Lambeau G, Davidson AD, Verkade P, Frank M, Berger I, Schaffitzel C
Sci Adv (2022) 8 pp. eadc9179-eadc9179 [ Pubmed: 36417532 DOI: doi:10.1126/sciadv.adc9179 ]
Single-particle cryo–negative-stain EM dataset of the compact conformer of kinesin-1 (Kif5C/KLC1)
Weijman JF, Yadav SKN, Surridge KJ, Cross JA, Borucu U, Mantell J, Woolfson DN, Schaffitzel C, Dodding MP
Sci Adv (2022) 8 [ DOI: 10.1126/sciadv.abp9660 Pubmed: 36112680 ]
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