Chimeric Adenovirus-derived dodecamer
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8qbx
Q-score: 0.707
Buzas D, Sun H, Toelzer C, Yadav SKN, Borucu U, Gautam G, Gupta K, Bufton JC, Capin J, Sessions RB, Garzoni F, Berger I, Schaffitzel C
Structure (2024) 32 pp. 342- [ Pubmed: 38198950 DOI: doi:10.1016/j.str.2023.12.010 ]
- Unidentified adenovirus (Virus from unidentified adenovirus)
- Penton protein (63 kDa, Protein from Human adenovirus sp.)
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8c9n
Q-score: 0.544
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ Pubmed: 38075238 DOI: doi:10.1093/abt/tbad024 ]
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ Pubmed: 38075238 DOI: doi:10.1093/abt/tbad024 ]
- Adah11 (Complex from Lama glama)
- Addocov-adah11 (Complex from Human adenovirus B3)
SARS CoV Spike protein, Closed C3 conformation
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 7zh1
Q-score: 0.638
Toelzer C, Gupta K, Yadav SKN, Hodgson L, Williamson MK, Buzas D, Borucu U, Powers K, Stenner R, Vasileiou K, Garzoni F, Fitzgerald D, Payre C, Gautam G, Lambeau G, Davidson AD, Verkade P, Frank M, Berger I, Schaffitzel C
Sci Adv (2022) 8 pp. eadc9179-eadc9179 [ DOI: doi:10.1126/sciadv.adc9179 Pubmed: 36417532 ]
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars cov spike protein, closed conformation, c3 symmetry (414 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- Spike glycoprotein,fibritin (138 kDa, Protein from Enterobacteria phage T4)
SARS CoV Spike protein, Closed C1 conformation
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 7zh2
Q-score: 0.63
Toelzer C, Gupta K, Yadav SKN, Hodgson L, Williamson MK, Buzas D, Borucu U, Powers K, Stenner R, Vasileiou K, Garzoni F, Fitzgerald D, Payre C, Gautam G, Lambeau G, Davidson AD, Verkade P, Frank M, Berger I, Schaffitzel C
Sci Adv (2022) 8 pp. eadc9179-eadc9179 [ DOI: doi:10.1126/sciadv.adc9179 Pubmed: 36417532 ]
- Sars cov spike protein, closed conformation, c1 symmetry (414 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- Spike glycoprotein,fibritin (136 kDa, Protein from Tequatrovirus T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS CoV Spike protein, Open conformation
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7zh5
Q-score: 0.529
Toelzer C, Gupta K, Yadav SKN, Hodgson L, Williamson MK, Buzas D, Borucu U, Powers K, Stenner R, Vasileiou K, Garzoni F, Fitzgerald D, Payre C, Gautam G, Lambeau G, Davidson AD, Verkade P, Frank M, Berger I, Schaffitzel C
Sci Adv (2022) 8 pp. eadc9179-eadc9179 [ DOI: doi:10.1126/sciadv.adc9179 Pubmed: 36417532 ]
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 7qus
Q-score: 0.624
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]
- Spike glycoprotein,fibritin (139 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 spike, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 7qur
Q-score: 0.636
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ DOI: doi:10.1126/science.abm3125 Pubmed: 35737812 ]
- Water (18 Da, Ligand)
- 2,3,5-tris(iodanyl)benzamide (498 Da, Ligand)
- Sars-cov-2 spike with ethylbenzamide-tri-iodo siallyllactose, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein,fibritin (139 kDa, Protein from Enterobacteria phage T4)
- Linoleic acid (280 Da, Ligand)
- N-acetyl-alpha-neuraminic acid (309 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C1 symmetry
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]
Buchanan CJ, Gaunt B, Harrison PJ, Yang Y, Liu J, Khan A, Giltrap AM, Le Bas A, Ward PN, Gupta K, Dumoux M, Tan TK, Schimaski L, Daga S, Picchiotti N, Baldassarri M, Benetti E, Fallerini C, Fava F, Giliberti A, Koukos PI, Davy MJ, Lakshminarayanan A, Xue X, Papadakis G, Deimel LP, Casablancas-Antras V, Claridge TDW, Bonvin AMJJ, Sattentau QJ, Furini S, Gori M, Huo J, Owens RJ, Schaffitzel C, Berger I, Renieri A, Naismith JH, Baldwin AJ, Davis BG
Science (2022) 377 pp. eabm3125-eabm3125 [ Pubmed: 35737812 DOI: doi:10.1126/science.abm3125 ]