Chimeric Adenovirus-derived dodecamer
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8qbx
Q-score: 0.707
Buzas D, Sun H, Toelzer C, Yadav SKN, Borucu U, Gautam G, Gupta K, Bufton JC, Capin J, Sessions RB, Garzoni F, Berger I, Schaffitzel C
Structure (2024) 32 pp. 342- [ Pubmed: 38198950 DOI: doi:10.1016/j.str.2023.12.010 ]
- Penton protein (63 kDa, Protein from Human adenovirus sp.)
- Unidentified adenovirus (Virus from unidentified adenovirus)
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8c9n
Q-score: 0.544
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ DOI: doi:10.1093/abt/tbad024 Pubmed: 38075238 ]
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C3 symmetry
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7od3
Q-score: 0.622
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ DOI: doi:10.1038/s41467-021-27881-6 Pubmed: 35017512 ]
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C1 symmetry
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7odl
Q-score: 0.595
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ DOI: doi:10.1038/s41467-021-27881-6 Pubmed: 35017512 ]
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c1 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Closed conformation, C1 symmetry
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 6zb4
Q-score: 0.587
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ DOI: doi:10.1126/science.abd3255 Pubmed: 32958580 ]
- Sars cov-2 spike protein, closed conformation, c1 symmetry (540 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Closed conformation, C3 symmetry
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6zb5
Q-score: 0.619
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ DOI: doi:10.1126/science.abd3255 Pubmed: 32958580 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars cov-2 spike protein, closed conformation, c3 symmetry (540 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)