10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8sx3
Q-score: 0.378
Schiffner T, Phung I, Ray R, Irimia A, Tian M, Swanson O, Lee JH, Lee CD, Marina-Zarate E, Cho SY, Huang J, Ozorowski G, Skog PD, Serra AM, Rantalainen K, Allen JD, Baboo S, Rodriguez OL, Himansu S, Zhou J, Hurtado J, Flynn CT, McKenney K, Havenar-Daughton C, Saha S, Shields K, Schulze S, Smith ML, Liang CH, Toy L, Pecetta S, Lin YC, Willis JR, Sesterhenn F, Kulp DW, Hu X, Cottrell CA, Zhou X, Ruiz J, Wang X, Nair U, Kirsch KH, Cheng HL, Davis J, Kalyuzhniy O, Liguori A, Diedrich JK, Ngo JT, Lewis V, Phelps N, Tingle RD, Spencer S, Georgeson E, Adachi Y, Kubitz M, Eskandarzadeh S, Elsliger MA, Amara RR, Landais E, Briney B, Burton DR, Carnathan DG, Silvestri G, Watson CT, Yates 3rd JR, Paulson JC, Crispin M, Grigoryan G, Ward AB, Sok D, Alt FW, Wilson IA, Batista FD, Crotty S, Schief WR
Nat Immunol (2024) 25 pp. 1073-1082 [ DOI: doi:10.1038/s41590-024-01833-w Pubmed: 38816615 ]
- W6-10 mouse fab heavy chain, w6-10 mouse light chain (Complex from Mus musculus)
- 10e8-gt10.2 immunogen in complex with human fab 10e8 and mouse fab w6-10 (Complex)
- 10e8-gt10.2 immunogen (Complex from synthetic construct)
- 10e8 light chain (22 kDa, Protein from Homo sapiens)
- W6-10 mouse fab heavy chain (23 kDa, Protein from Mus musculus)
- W6-10 mouse light chain (23 kDa, Protein from Mus musculus)
- 10e8 fab heavy chain (25 kDa, Protein from Homo sapiens)
- 10e8-gt10.2 immunogen (21 kDa, Protein from synthetic construct)
- 10e8 fab heavy chain, 10e8 light chain (Complex from Homo sapiens)
BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-4 from animal Rh.33104 (Wk26 time point)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7l8d
Q-score: 0.318
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Bg505 sosip md39 - gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 sosip md39 - gp120 (52 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33104 pabc-3 - light chain (8 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg505 sosip md39 in complex with the polyclonal fab pabc-4 from animal rh.33104 (wk26 time point) (Complex from Human immunodeficiency virus 1)
- Rh.33104 pabc-3 - heavy chain (9 kDa, Protein from Macaca mulatta)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7l8e
Q-score: 0.362
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Rh.33172 pabc-1 heavy chain, rh.33172 pabc-1 light chain (Complex from Macaca mulatta)
- Envelope glycoprotein gp160 (74 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33172 pabc-1 light chain (8 kDa, Protein from Macaca mulatta)
- Bg505 sosip.v5.2(7s) in complex with the polyclonal fab pabc-1 from animal rh.33172 (wk38 time point) (Complex)
- Envelope glycoprotein gp160 (Complex from Human immunodeficiency virus 1)
- Rh.33172 pabc-1 heavy chain (9 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7l8g
Q-score: 0.361
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Bg505 sosip.v5.2(7s) in complex with the polyclonal fab pabc-3 from animal rh.33172 (wk38 time point) (Complex)
- Rh.33172 pabc-3 heavy chain (9 kDa, Protein from Macaca mulatta)
- Rh.33172 pabc-3 heavy chain, rh.33172 pabc-3 light chain (Complex from Macaca mulatta)
- Envelope glycoprotein gp160 (74 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp160 (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rh.33172 pabc-3 light chain (8 kDa, Protein from Macaca mulatta)
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7l8s
Q-score: 0.355
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ DOI: doi:10.1038/s41467-021-25087-4 Pubmed: 34376662 ]
- Rh.33172 pabc-4 - light chain (8 kDa, Protein from Macaca mulatta)
- Bg505 sosip.v5.2(7s) - gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33172 pabc-4 - heavy chain (9 kDa, Protein from Macaca mulatta)
- Bg505 sosip.v5.2(7s) in complex with the polyclonal fab pabc-4 from animal rh.33172 (wk38 time point) (Complex)
- Polyclonal fab pabc-4 from animal rh.33172 (Complex from Macaca mulatta)
- Bg505 sosip.v5.2(7s) - gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg505 sosip.v5.2(7s) (Complex from Human immunodeficiency virus 1)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7l8u
Q-score: 0.341
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Rh.33311 pabc-2 - heavy chain (9 kDa, Protein from Macaca mulatta)
- Bg505 sosip.v5.2 n241/n289 (Complex from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 - gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33311 pabc-2 - light chain (8 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg505 sosip.v5.2 n241/n289 in complex with the polyclonal fab pabc-2 from animal rh.33311 (wk26 time point) (Complex)
- Bg505 sosip.v5.2 n241/n289 - gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Polyclonal fab pabc-2 from animal rh.33311 (Complex from Macaca mulatta)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7l8w
Q-score: 0.41
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Bg505 sosip.v5.2 n241/n289 (Complex from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 - gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33311 pabc-3 - light chain (8 kDa, Protein from Macaca mulatta)
- Rh.33311 pabc-3 - heavy chain (9 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Polyclonal fab pabc-3 from animal rh.33311 (Complex from Macaca mulatta)
- Bg505 sosip.v5.2 n241/n289 - gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 in complex with the polyclonal fab pabc-3 from animal rh.33311 (wk26 time point) (Complex)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7l8y
Q-score: 0.393
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Bg505 sosip.v5.2 n241/n289 - gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- Rh.33311 pabc-5 - heavy chain (9 kDa, Protein from Macaca mulatta)
- Polyclonal fab pabc-5 from animal rh.33311 (Complex from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg505 sosip.v5.2 n241/n289 gp120/gp41 (Complex from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 - gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 in complex with the polyclonal fab pabc-5 from animal rh.33311 (wk26 time point) (Complex)
- Rh.33311 pabc-5 - light chain (8 kDa, Protein from Macaca mulatta)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7l90
Q-score: 0.331
Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, Rantalainen K, Cannac F, Yang YR, de la Pena AT, Rocha RF, Berndsen ZT, Baker D, King NP, Sanders RW, Moore JP, Crotty S, Crispin M, Montefiori DC, Burton DR, Schief WR, Silvestri G, Ward AB
Nat Commun (2021) 12 pp. 4817-4817 [ Pubmed: 34376662 DOI: doi:10.1038/s41467-021-25087-4 ]
- Bg505 sosip.v5.2 n241/n289 - gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 in complex with the polyclonal fab pabc-8 from animal rh.33311 (wk26 time point) (Complex)
- Rh.33311 pabc-8 - light chain (7 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rh.33311 pabc-8 - heavy chain (9 kDa, Protein from Macaca mulatta)
- Bg505 sosip.v5.2 n241/n289 gp120/gp41 (Complex from Human immunodeficiency virus 1)
- Bg505 sosip.v5.2 n241/n289 - gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Polyclonal fab pabc-8 from animal rh.33311 (Complex from Macaca mulatta)