Homology model of the full-length AP-3 complex in a compact open conformation
Resolution: 9.1 Å
EM Method: Single-particle
Fitted PDBs: 7p3x
Q-score: 0.085
Schoppe J, Schubert E, Apelbaum A, Yavavli E, Birkholz O, Stephanowitz H, Han Y, Perz A, Hofnagel O, Liu F, Piehler J, Raunser S, Ungermann C
J Biol Chem (2021) 297 pp. 101334-101334 [ Pubmed: 34688652 DOI: doi:10.1016/j.jbc.2021.101334 ]
- Ap-3 complex subunit delta (110 kDa, Protein from Saccharomyces cerevisiae)
- Full-length ap-3 complex from saccharomyces cerevisiae (Complex from Saccharomyces cerevisiae)
- Ap complex subunit sigma (21 kDa, Protein from Saccharomyces cerevisiae)
- Ap-3 complex subunit mu (54 kDa, Protein from Saccharomyces cerevisiae)
- Y55_g0035830.mrna.1.cds.1 (91 kDa, Protein from Saccharomyces cerevisiae)
Homology model of the full-length AP-3 complex in an intermediate open conformation
Resolution: 10.1 Å
EM Method: Single-particle
Fitted PDBs: 7p3y
Q-score: 0.093
Schoppe J, Schubert E, Apelbaum A, Yavavli E, Birkholz O, Stephanowitz H, Han Y, Perz A, Hofnagel O, Liu F, Piehler J, Raunser S, Ungermann C
J Biol Chem (2021) 297 pp. 101334-101334 [ Pubmed: 34688652 DOI: doi:10.1016/j.jbc.2021.101334 ]
- Ap-3 complex subunit delta (110 kDa, Protein from Saccharomyces cerevisiae)
- Full-length ap-3 complex from saccharomyces cerevisiae (Complex from Saccharomyces cerevisiae)
- Ap complex subunit sigma (21 kDa, Protein from Saccharomyces cerevisiae)
- Ap-3 complex subunit mu (54 kDa, Protein from Saccharomyces cerevisiae)
- Y55_g0035830.mrna.1.cds.1 (91 kDa, Protein from Saccharomyces cerevisiae)
Homology model of the full-length AP-3 complex in a stretched open conformation
Resolution: 10.5 Å
EM Method: Single-particle
Fitted PDBs: 7p3z
Q-score: 0.089
Schoppe J, Schubert E, Apelbaum A, Yavavli E, Birkholz O, Stephanowitz H, Han Y, Perz A, Hofnagel O, Liu F, Piehler J, Raunser S, Ungermann C
J Biol Chem (2021) 297 pp. 101334-101334 [ Pubmed: 34688652 DOI: doi:10.1016/j.jbc.2021.101334 ]
- Ap-3 complex subunit delta (110 kDa, Protein from Saccharomyces cerevisiae)
- Full-length ap-3 complex from saccharomyces cerevisiae (Complex from Saccharomyces cerevisiae)
- Ap complex subunit sigma (21 kDa, Protein from Saccharomyces cerevisiae)
- Ap-3 complex subunit mu (54 kDa, Protein from Saccharomyces cerevisiae)
- Y55_g0035830.mrna.1.cds.1 (91 kDa, Protein from Saccharomyces cerevisiae)
Tc holotoxin prepore TcdA1-TcdB2-TccC3-Cdc42
Roderer D, Schubert E, Sitsel O, Raunser S
Nat Commun (2019) 10 pp. 5263-5263 [ DOI: doi:10.1038/s41467-019-13253-8 Pubmed: 31748551 ]
PTC3 holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 6h6e
Q-score: 0.371
Gatsogiannis C, Merino F, Roderer D, Balchin D, Schubert E, Kuhlee A, Hayer-Hartl M, Raunser S
Nature (2018) 563 pp. 209-213 [ DOI: doi:10.1038/s41586-018-0556-6 Pubmed: 30232455 ]
- Ptc3 holotoxin complex in prepore state (5 x tcda1, 1 x tcdb2, 1 x tccc3) (Complex from Photorhabdus luminescens)
- Tcda1 (283 kDa, Protein from Photorhabdus luminescens)
- Tcda1 (Complex from Photorhabdus luminescens)
- Tcdb2,tccc3 (273 kDa, Protein from Photorhabdus luminescens)
- Tcdb2/tccc3 (Complex from Photorhabdus luminescens)
PTC3 holotoxin complex from Photorhabdus luminiscens - Mutant TcC-D651A
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 6h6f
Q-score: 0.375
Gatsogiannis C, Merino F, Roderer D, Balchin D, Schubert E, Kuhlee A, Hayer-Hartl M, Raunser S
Nature (2018) 563 pp. 209-213 [ DOI: doi:10.1038/s41586-018-0556-6 Pubmed: 30232455 ]
- Tcdb2/tccc3-d651a (Complex from Photorhabdus luminescens)
- Tcda1 (283 kDa, Protein from Photorhabdus luminescens)
- Tcda1 (Complex from Photorhabdus luminescens)
- Ptc3 holotoxin complex in prepore state - mutant tcc-d651a (1 MDa, Complex)
- Tcdb2,tccc3,tccc3 (273 kDa, Protein from Photorhabdus luminescens)
XaxAB pore complex from Xenorhabdus nematophila
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6gy6
Q-score: 0.36
Schubert E, Vetter IR, Prumbaum D, Penczek PA, Raunser S
eLife (2018) 7 [ Pubmed: 30010541 DOI: doi:10.7554/eLife.38017 ]
- Xaxa (47 kDa, Protein from Xenorhabdus nematophila ATCC 19061)
- Xaxab complex (13 xaxa + 13 xaxb) (Complex from Xenorhabdus nematophila ATCC 19061)
- Xaxb protomer (Complex from Xenorhabdus nematophila ATCC 19061)
- Xaxb (38 kDa, Protein from Xenorhabdus nematophila ATCC 19061)
- Xaxa protomer (Complex from Xenorhabdus nematophila ATCC 19061)