Structure of Clostridioides difficile Component A (50-463) in Complex with a CDTb Oligomer
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9bbf
Q-score: 0.468
To Be Published
- Calcium ion (40 Da, Ligand)
- Adp-ribosyltransferase enzymatic component (47 kDa, Protein from Clostridioides difficile)
- Adp-ribosyltransferase binding component (94 kDa, Protein from Clostridioides difficile)
- Clostridioides difficile transferase component a in complex with clostridioides difficile transferase component b (Complex from Clostridioides difficile)
Motion corrected micrographs - purified Dot/Icm T4SS particles
Legionella pneumophila Dot/Icm T4SS C1 Reconstruction
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7muc
Q-score: 0.393
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss c1 (Complex from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Legionella pneumophila Dot/Icm T4SS OMC
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7mud
Q-score: 0.564
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss omc (Complex from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
Legionella pneumophila Dot/Icm T4SS PR
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7mue
Q-score: 0.601
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss pr (Complex from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 1
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7muq
Q-score: 0.335
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss c1 (Complex from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 2
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7mus
Q-score: 0.305
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Reconstruction of the legionella pneumophila dot/icm t4ss 3dva map 2 (Complex from Legionella pneumophila)
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 3
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7muv
Q-score: 0.316
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss 3dva map 3 (Complex from Legionella pneumophila)
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 4
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7muw
Q-score: 0.282
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss 3dva map 4 (Complex from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 5
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7muy
Q-score: 0.276
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss 3dva map 5 (Complex from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)