Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8uhe
Q-score: 0.457
Gisriel CJ, Shen G, Brudvig GW, Bryant DA
J Biol Chem (2023) 300 pp. 105590-105590 [ DOI: doi:10.1016/j.jbc.2023.105590 Pubmed: 38141759 ]
- Apcf (18 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcd5 (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Apce2 (87 kDa, Protein from Synechococcus sp. PCC 7335)
- Mesobiliverdin ix(alpha) (586 Da, Ligand)
- Apcb2 (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcd2 (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcc (7 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcd3 (20 kDa, Protein from Synechococcus sp. PCC 7335)
- Far-red light-absorbing allophycocyanin core (Complex from Synechococcus sp. PCC 7335)
- Phycocyanobilin (588 Da, Ligand)
- Chloride ion (35 Da, Ligand)
Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8uhi
Q-score: 0.668
Gisriel CJ, Shen G, Brudvig GW, Bryant DA
J Biol Chem (2023) 300 pp. 105590-105590 [ DOI: doi:10.1016/j.jbc.2023.105590 Pubmed: 38141759 ]
- Water (18 Da, Ligand)
- Ribulose-1,5-diphosphate (310 Da, Ligand)
- Ribulose bisphosphate carboxylase small subunit (13 kDa, Protein from Synechococcus sp. PCC 7335)
- Magnesium ion (24 Da, Ligand)
- Far-red light-absorbing allophycocyanin core (Complex from Synechococcus sp. PCC 7335)
- Ribulose bisphosphate carboxylase large subunit (53 kDa, Protein from Synechococcus sp. PCC 7335)
Helical rods of far-red light-absorbing allophycocyanin in Synechococcus sp.
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8ddy
Q-score: 0.6
Gisriel CJ, Elias E, Shen G, Soulier NT, Flesher DA, Gunner MR, Brudvig GW, Croce R, Bryant DA
Sci Adv (2023) 9 pp. eadg0251-eadg0251 [ DOI: doi:10.1126/sciadv.adg0251 Pubmed: 36961897 ]
- Far-red light allophycocyanin (Complex from Synechococcus sp. 63AY4M1)
- Allophycocyanin subunit beta (17 kDa, Protein from Synechococcus sp. 63AY4M1)
- Phycocyanobilin (588 Da, Ligand)
- Allophycocyanin subunit alpha (20 kDa, Protein from Synechococcus sp. 63AY4M1)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
Structure of a dimeric photosystem II complex acclimated to far-red light
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8eqm
Q-score: 0.553
Gisriel CJ, Shen G, Flesher DA, Kurashov V, Golbeck JH, Brudvig GW, Amin M, Bryant DA
J Biol Chem (2022) 299 pp. 102815-102815 [ DOI: doi:10.1016/j.jbc.2022.102815 Pubmed: 36549647 ]
- Photosystem ii reaction center protein m (3 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Synechococcus sp. PCC 7335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll d (895 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Synechococcus sp. PCC 7335)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein i (4 kDa, Protein from Synechococcus sp. PCC 7335)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center x protein (4 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem ii 12 kda extrinsic protein (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Cytochrome b559 subunit beta (5 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem ii reaction center protein h (7 kDa, Protein from Synechococcus sp. PCC 7335)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Chlorophyll f (905 Da, Ligand)
- Photosystem ii protein d1 (39 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem ii reaction center protein l (4 kDa, Protein from Synechococcus sp. PCC 7335)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Synechococcus sp. PCC 7335)
- Cytochrome c-550 (18 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem ii d2 protein (39 kDa, Protein from Synechococcus sp. PCC 7335)
- Far-red light-acclimated photosystem ii (Complex from Synechococcus sp. PCC 7335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii manganese-stabilizing polypeptide (29 kDa, Protein from Synechococcus sp. PCC 7335)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Synechococcus sp. PCC 7335)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Synechococcus sp. PCC 7335)
- Ca-mn4-o5 cluster (339 Da, Ligand)
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 7sa3
Q-score: 0.68
Gisriel CJ, Shen G, Ho MY, Kurashov V, Flesher DA, Wang J, Armstrong WH, Golbeck JH, Gunner MR, Vinyard DJ, Debus RJ, Brudvig GW, Bryant DA
J Biol Chem (2021) 298 pp. 101424-101424 [ Pubmed: 34801554 DOI: doi:10.1016/j.jbc.2021.101424 ]
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Synechococcus sp. PCC 7335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll d (895 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein i (4 kDa, Protein from Synechococcus sp. PCC 7335)
- Fe (ii) ion (55 Da, Ligand)
- Cytochrome b559 subunit beta (5 kDa, Protein from Synechococcus sp. PCC 7335)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Chlorophyll f (905 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem ii d2 protein (39 kDa, Protein from Synechococcus sp. PCC 7335)
- Monomeric photosystem ii from cyanobacteria acclimated to far-red light (Complex from Synechococcus sp. PCC 7335)
- Calcium ion (40 Da, Ligand)
- Unknown (1 kDa, Protein from Synechococcus sp. PCC 7335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem q(b) protein (40 kDa, Protein from Synechococcus sp. PCC 7335)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Synechococcus sp. PCC 7335)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Synechococcus sp. PCC 7335)
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7s3d
Q-score: 0.599
Gisriel CJ, Flesher DA, Shen G, Wang J, Ho MY, Brudvig GW, Bryant DA
J Biol Chem (2021) 298 pp. 101408-101408 [ Pubmed: 34793839 DOI: doi:10.1016/j.jbc.2021.101408 ]
- Far-red light-acclimated photosystem i from synechococcus sp. pcc 7335 (Complex from Synechococcus sp. PCC 7335)
- Phylloquinone (450 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (86 kDa, Protein from Synechococcus sp. PCC 7335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 2fe-2s ferredoxin-type domain-containing protein (10 kDa, Protein from Synechococcus sp. PCC 7335)
- Psi subunit v (18 kDa, Protein from Synechococcus sp. PCC 7335)
- Beta-carotene (536 Da, Ligand)
- Photosystem i 16 kda polypeptide (17 kDa, Protein from Synechococcus sp. PCC 7335)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Chlorophyll f (905 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Synechococcus sp. PCC 7335)
- Psi-f (18 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Synechococcus sp. PCC 7335)
- Psac (8 kDa, Protein from Synechococcus sp. PCC 7335)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Synechococcus sp. PCC 7335)
- Chlorophyll a isomer (893 Da, Ligand)
- Psai2 (7 kDa, Protein from Synechococcus sp. PCC 7335)
- Calcium ion (40 Da, Ligand)
- Psam (3 kDa, Protein from Synechococcus sp. PCC 7335)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Synechococcus sp. PCC 7335)
Structure of Photosystem I Acclimated to Far-red Light
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 6pnj
Q-score: 0.566
Gisriel C, Shen G, Kurashov V, Ho MY, Zhang S, Williams D, Golbeck JH, Fromme P, Bryant DA
Sci Adv (2020) 6 pp. eaay6415- [ DOI: doi:10.1126/sciadv.aay6415 ]
- Photosystem i reaction center protein subunit xi (18 kDa, Protein from Fischerella thermalis PCC 7521)
- Photosystem i protein psad (17 kDa, Protein from Fischerella thermalis PCC 7521)
- Photosystem i p700 chlorophyll a apoprotein a2 (83 kDa, Protein from Fischerella thermalis PCC 7521)
- Photosystem i subunit viii (7 kDa, Protein from Fischerella thermalis PCC 7521)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Fischerella thermalis PCC 7521)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Fischerella thermalis PCC 7521)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Fischerella thermalis PCC 7521)
- Photosystem i reaction centre subunit ix / psaj (5 kDa, Protein from Fischerella thermalis PCC 7521)
- Photosystem i reaction center subunit psak (3 kDa, Protein from Fischerella thermalis PCC 7521)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center protein psaf subunit iii (17 kDa, Protein from Fischerella thermalis PCC 7521)
- Chlorophyll f (905 Da, Ligand)
- Photosystem i from far-red light-adapted fischerella thermalis pcc 7521 (Complex from Fischerella thermalis PCC 7521)
- Chlorophyll a isomer (893 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem one psax (11 kDa, Protein from Fischerella thermalis PCC 7521)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (87 kDa, Protein from Fischerella thermalis PCC 7521)