Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 9epr
Q-score: 0.248
Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ
Nat Commun (2024) 15 pp. 8928-8928 [ Pubmed: 39414813 DOI: doi:10.1038/s41467-024-53208-2 ]
- Guanine nucleotide-binding protein g(t) subunit gamma-t1 (Complex from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Bos taurus)
- Kumopsin1 (42 kDa, Protein from Hasarius adansoni)
- Ternary complex of jumping spider rhodopsin-1 with a human gi heterotrimer (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (Complex from Bos taurus)
- Retinal (284 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(t) subunit gamma-t1 (8 kDa, Protein from Bos taurus)
- Jumping spider rhodopsin-1 (Complex from Hasarius adansoni)
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 9epp
Q-score: 0.413
Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ
Nat Commun (2024) 15 pp. 8928-8928 [ Pubmed: 39414813 DOI: doi:10.1038/s41467-024-53208-2 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Kumopsin1 (37 kDa, Protein from Hasarius adansoni)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (Complex from Homo sapiens)
- 11,20-ethanoretinal (310 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (Complex from Homo sapiens)
- Ternary complex of jumping spider rhodopsin-1 with a chimeric giq heterotrimer (Complex)
- Human gi/jumping spider gq chimera (Complex from Hasarius adansoni)
- Jumping spider rhodopsin-1 (Complex from Hasarius adansoni)
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Resolution: 4.15 Å
EM Method: Single-particle
Fitted PDBs: 9epq
Q-score: 0.348
Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ
Nat Commun (2024) 15 pp. 8928-8928 [ Pubmed: 39414813 DOI: doi:10.1038/s41467-024-53208-2 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Kumopsin1 (37 kDa, Protein from Hasarius adansoni)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (Complex from Homo sapiens)
- 11,20-ethanoretinal (310 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (Complex from Homo sapiens)
- Ternary complex of jumping spider rhodopsin-1 with a chimeric giq heterotrimer (Complex)
- Human gi/jumping spider gq chimera (Complex from Hasarius adansoni)
- Jumping spider rhodopsin-1 (Complex from Hasarius adansoni)
Cryo-EM structure of the zeaxanthin-bound kin4B8
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8i2z
Q-score: 0.703
Chazan A, Das I, Fujiwara T, Murakoshi S, Rozenberg A, Molina-Marquez A, Sano FK, Tanaka T, Gomez-Villegas P, Larom S, Pushkarev A, Malakar P, Hasegawa M, Tsukamoto Y, Ishizuka T, Konno M, Nagata T, Mizuno Y, Katayama K, Abe-Yoshizumi R, Ruhman S, Inoue K, Kandori H, Leon R, Shihoya W, Yoshizawa S, Sheves M, Nureki O, Beja O
Nature (2023) 615 pp. 535-540 [ DOI: doi:10.1038/s41586-023-05774-6 Pubmed: 36859551 ]
- Zeaxanthin (568 Da, Ligand)
- Retinal (284 Da, Ligand)
- Xanthorhodopsin (28 kDa, Protein from uncultured Bdellovibrionales bacterium)
- Kin4b8 (Cellular component from uncultured Bdellovibrionales bacterium)
- Water (18 Da, Ligand)
Cryo-EM structure of Bestrhodopsin (rhodopsin-rhodopsin-bestrophin) complex
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7pl9
Q-score: 0.458
Rozenberg A, Kaczmarczyk I, Matzov D, Vierock J, Nagata T, Sugiura M, Katayama K, Kawasaki Y, Konno M, Nagasaka Y, Aoyama M, Das I, Pahima E, Church J, Adam S, Borin VA, Chazan A, Augustin S, Wietek J, Dine J, Peleg Y, Kawanabe A, Fujiwara Y, Yizhar O, Sheves M, Schapiro I, Furutani Y, Kandori H, Inoue K, Hegemann P, Beja O, Shalev-Benami M
Nat Struct Mol Biol (2022) 29 pp. 592-603 [ DOI: doi:10.1038/s41594-022-00783-x Pubmed: 35710843 ]
- Rhodopsin (134 kDa, Protein from Phaeocystis)
- Retinal (284 Da, Ligand)
- Rhodopsin (670 kDa, Complex from Phaeocystis antarctica)