Cryo-EM structure of H2A-ubiquitinated nucleosome
Ohtomo H, Ito S, McKenzie NJ, Uckelmann M, Wakamori M, Ehara H, Furukawa A, Tsunaka Y, Shibata M, Sekine SI, Umehara T, Davidovich C, Koseki H, Nishimura Y
J Mol Biol (2023) 435 pp. 167936-167936 [ DOI: doi:10.1016/j.jmb.2022.167936 Pubmed: 36610636 ]
The pump-like chanelrhodopsin ChRmine
Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, Lo M, Benster T, Uemura T, Liu K, Shibata M, Nomura N, Iwata S, Nureki O, Dror RO, Inoue K, Deisseroth K, Kato HE
Cell (2022) [ Pubmed: 35114111 DOI: 10.1016/j.cell.2022.01.007 ]
Image sets:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 7w9w
Q-score: 0.708
Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, Lo M, Benster T, Uemura T, Liu K, Shibata M, Nomura N, Iwata S, Nureki O, Dror RO, Inoue K, Deisseroth K, Kato HE
Cell (2022) 185 pp. 672- [ DOI: doi:10.1016/j.cell.2022.01.007 Pubmed: 35114111 ]
- Palmitic acid (256 Da, Ligand)
- Water (18 Da, Ligand)
- Chrmine (35 kDa, Protein from Rhodomonas lens)
- Retinal (284 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Chrmine (Complex from Rhodomonas lens)
2.12 angstrom cryo-EM map of the pump-like channelrhodopsin ChRmine with Fab antibody fragment
Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, Lo M, Benster T, Uemura T, Liu K, Shibata M, Nomura N, Iwata S, Nureki O, Dror RO, Inoue K, Deisseroth K, Kato HE
Cell (2022) 185 pp. 672-689.e23 [ DOI: doi:10.1016/j.cell.2022.01.007 Pubmed: 35114111 ]
- Chrmine with fab (Protein from Rhodomonas lens)
- Chrmine (Complex from Rhodomonas lens)
Cilia from MOT7 deletion mutant of Chlamydomonas
Kutomi O, Yamamoto R, Hirose K, Mizuno K, Nakagiri Y, Imai H, Noga A, Obbineni JM, Zimmermann N, Nakajima M, Shibata D, Shibata M, Shiba K, Kita M, Kigoshi H, Tanaka Y, Yamasaki Y, Asahina Y, Song C, Nomura M, Nomura M, Nakajima A, Nakachi M, Yamada L, Nakazawa S, Sawada H, Murata K, Mitsuoka K, Ishikawa T, Wakabayashi KI, Kon T, Inaba K
Sci Adv (2021) 7 [ Pubmed: 33637535 DOI: doi:10.1126/sciadv.abf3621 ]
Chlamydomonas cilia with MOT7-BCCP labeled
Kutomi O, Yamamoto R, Hirose K, Mizuno K, Nakagiri Y, Imai H, Noga A, Obbineni JM, Zimmermann N, Nakajima M, Shibata D, Shibata M, Shiba K, Kita M, Kigoshi H, Tanaka Y, Yamasaki Y, Asahina Y, Song C, Nomura M, Nomura M, Nakajima A, Nakachi M, Yamada L, Nakazawa S, Sawada H, Murata K, Mitsuoka K, Ishikawa T, Wakabayashi KI, Kon T, Inaba K
Sci Adv (2021) 7 [ Pubmed: 33637535 DOI: doi:10.1126/sciadv.abf3621 ]
Microtubule doublet structure from WT Chlamydomonas as a control for MOT7 mutants
Kutomi O, Yamamoto R, Hirose K, Mizuno K, Nakagiri Y, Imai H, Noga A, Obbineni JM, Zimmermann N, Nakajima M, Shibata D, Shibata M, Shiba K, Kita M, Kigoshi H, Tanaka Y, Yamasaki Y, Asahina Y, Song C, Nomura M, Nomura M, Nakajima A, Nakachi M, Yamada L, Nakazawa S, Sawada H, Murata K, Mitsuoka K, Ishikawa T, Wakabayashi KI, Kon T, Inaba K
Sci Adv (2021) 7 [ Pubmed: 33637535 DOI: doi:10.1126/sciadv.abf3621 ]