Cryo-EM of the OmcZ nanowires from Geobacter sulfurreducens
Resolution: 4.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 8d9m
Q-score: 0.32
Wang F, Chan CH, Suciu V, Mustafa K, Ammend M, Si D, Hochbaum AI, Egelman EH, Bond DR
eLife (2022) 11 [ DOI: doi:10.7554/eLife.81551 Pubmed: 36062910 ]
- Filament of omcz protein (Complex from Geobacter sulfurreducens)
- Heme c (618 Da, Ligand)
- Cytochrome c (49 kDa, Protein from Geobacter sulfurreducens)
Cryo-EM of the OmcE nanowires from Geobacter sulfurreducens
Resolution: 4.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 7tfs
Q-score: 0.343
Wang F, Mustafa K, Suciu V, Joshi K, Chan CH, Choi S, Su Z, Si D, Hochbaum AI, Egelman EH, Bond DR
Nat Microbiol (2022) 7 pp. 1291-1300 [ DOI: doi:10.1038/s41564-022-01159-z Pubmed: 35798889 ]
- Cytochrome c (23 kDa, Protein from Geobacter sulfurreducens)
- Heme c (618 Da, Ligand)
- Filament of omce protein (Complex from Geobacter sulfurreducens)
Cryo-EM structure of PilA-N and PilA-C from Geobacter sulfurreducens
Resolution: 4.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 7tgg
Q-score: 0.364
Wang F, Mustafa K, Suciu V, Joshi K, Chan CH, Choi S, Su Z, Si D, Hochbaum AI, Egelman EH, Bond DR
Nat Microbiol (2022) 7 pp. 1291-1300 [ DOI: doi:10.1038/s41564-022-01159-z Pubmed: 35798889 ]
Structure of yeast Ubr1 in complex with Ubc2 and N-degron
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7mex
Q-score: 0.45
Pan M, Zheng Q, Wang T, Liang L, Mao J, Zuo C, Ding R, Ai H, Xie Y, Si D, Yu Y, Liu L, Zhao M
Nature (2021) 600 pp. 334-338 [ Pubmed: 34789879 DOI: doi:10.1038/s41586-021-04097-8 ]
- Ubiquitin-conjugating enzyme e2 2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- E3 ubiquitin-protein ligase ubr1 (225 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast ubr1 in complex with ubc2 and n-degron (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- N-degron (4 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7mey
Q-score: 0.407
Pan M, Zheng Q, Wang T, Liang L, Mao J, Zuo C, Ding R, Ai H, Xie Y, Si D, Yu Y, Liu L, Zhao M
Nature (2021) 600 pp. 334-338 [ Pubmed: 34789879 DOI: doi:10.1038/s41586-021-04097-8 ]
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Monoubiquitinated n-degron (4 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ubiquitin-conjugating enzyme e2 2 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase ubr1 (225 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 2-(ethylamino)ethane-1-thiol (105 Da, Ligand)
- Yeast ubr1 in complex with ubc2 and monoubiquitinated n-degron (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)