Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8byt
Q-score: 0.611
Silale A, Zhu Y, Witwinowski J, Smith RE, Newman KE, Bhamidimarri SP, Basle A, Khalid S, Beloin C, Gribaldo S, van den Berg B
Nat Commun (2023) 14 pp. 7152-7152 [ Pubmed: 37932269 DOI: doi:10.1038/s41467-023-42601-y ]
BtuB3G3 bound to cyanocobalamin with disordered EL8
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8p97
Q-score: 0.564
Abellon-Ruiz J, Jana K, Silale A, Frey AM, Basle A, Trost M, Kleinekathofer U, van den Berg B
Nat Commun (2023) 14 pp. 4714-4714 [ Pubmed: 37543597 DOI: doi:10.1038/s41467-023-40427-2 ]
- Cyanocobalamin (1 kDa, Ligand)
- Tonb-dependent receptor (78 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Putative surface layer protein (41 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Complex of tonb-dependent transporter btub3 with surface lipoprotein btug3 bound to cyanocobalamin (state 2) (122 kDa, Complex from Bacteroides thetaiotaomicron VPI-5482)
BtuB3G3 bound to cyanocobalamin with ordered EL8
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8p98
Q-score: 0.506
Abellon-Ruiz J, Jana K, Silale A, Frey AM, Basle A, Trost M, Kleinekathofer U, van den Berg B
Nat Commun (2023) 14 pp. 4714-4714 [ Pubmed: 37543597 DOI: doi:10.1038/s41467-023-40427-2 ]
- Cyanocobalamin (1 kDa, Ligand)
- Vitamin b12 transporter btub (81 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Putative surface layer protein (41 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Complex of tonb-dependent transporter btub3 with surface lipoprotein btug3 bound to cyanocobalamin (state 1) (122 kDa, Complex from Bacteroides thetaiotaomicron VPI-5482)
Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8aa1
Q-score: 0.57
White JBR, Silale A, Feasey M, Heunis T, Zhu Y, Zheng H, Gajbhiye A, Firbank S, Basle A, Trost M, Bolam DN, van den Berg B, Ranson NA
Nature (2023) 618 pp. 583-589 [ DOI: doi:10.1038/s41586-023-06146-w Pubmed: 37286596 ]
- Magnesium ion (24 Da, Ligand)
- Levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides dp 8-12 (Complex from Bacteroides thetaiotaomicron VPI-5482)
- Susc homolog (115 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Susd homolog (66 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8aa3
Q-score: 0.59
White JBR, Silale A, Feasey M, Heunis T, Zhu Y, Zheng H, Gajbhiye A, Firbank S, Basle A, Trost M, Bolam DN, van den Berg B, Ranson NA
Nature (2023) 618 pp. 583-589 [ DOI: doi:10.1038/s41586-023-06146-w Pubmed: 37286596 ]
- Susd homolog (65 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Magnesium ion (24 Da, Ligand)
- Susc homolog (115 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Inactive levan utilisation machinery (utilisome) in the presence of fructo-oligosaccharides dp 15-25 (Complex from Bacteroides thetaiotaomicron)