penton capsomer of the VZV C-capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8xa0
Q-score: 0.195
Cao L, Wang N, Lv Z, Chen W, Chen Z, Song L, Sha X, Wang G, Hu Y, Lian X, Cui G, Fan J, Quan Y, Liu H, Hou H, Wang X
Hlife (2024) 2 pp. 64-74 [ DOI: doi:10.1016/j.hlife.2023.10.007 ]
- Tri2b (28 kDa, Protein from Human alphaherpesvirus 3)
- Major capsid protein (152 kDa, Protein from Human alphaherpesvirus 3)
- Capsid vertex component 2 (10 kDa, Protein from Human alphaherpesvirus 3)
- Large tegument protein deneddylase (5 kDa, Protein from Human alphaherpesvirus 3)
- Human alphaherpesvirus 3 (Virus from Human alphaherpesvirus 3)
- Tri1 (32 kDa, Protein from Human alphaherpesvirus 3)
- Tri2a (27 kDa, Protein from Human alphaherpesvirus 3)
- Capsid vertex component 1 (73 kDa, Protein from Human alphaherpesvirus 3)
Penton capsomer of the VZV B-Capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8xa2
Q-score: 0.217
Cao L, Wang N, Lv Z, Chen W, Chen Z, Song L, Sha X, Wang G, Hu Y, Lian X, Cui G, Fan J, Quan Y, Liu H, Hou H, Wang X
Hlife (2024) 2 pp. 64-74 [ DOI: doi:10.1016/j.hlife.2023.10.007 ]
- Tri2b (28 kDa, Protein from Human alphaherpesvirus 3)
- Major capsid protein (152 kDa, Protein from Human alphaherpesvirus 3)
- Human alphaherpesvirus 3 (Virus from Human alphaherpesvirus 3)
- Tri1 (32 kDa, Protein from Human alphaherpesvirus 3)
- Tri2a (27 kDa, Protein from Human alphaherpesvirus 3)
SARS-CoV-2 S-6P in complex with 9 Fabs
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7e8c
Q-score: 0.39
Cao Y, Yisimayi A, Bai Y, Huang W, Li X, Zhang Z, Yuan T, An R, Wang J, Xiao T, Du S, Ma W, Song L, Li Y, Li X, Song W, Wu J, Liu S, Li X, Zhang Y, Su B, Guo X, Wei Y, Gao C, Zhang N, Zhang Y, Dou Y, Xu X, Shi R, Lu B, Jin R, Ma Y, Qin C, Wang Y, Feng Y, Xiao J, Xie XS
Cell Res (2021) 31 pp. 732-741 [ DOI: doi:10.1038/s41422-021-00514-9 Pubmed: 34021265 ]
- 604 h (23 kDa, Protein from Homo sapiens)
- 604 l (23 kDa, Protein from Homo sapiens)
- N9 h (24 kDa, Protein from Homo sapiens)
- 368-2 h (24 kDa, Protein from Homo sapiens)
- Sars-cov-2 s (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 604 h, 604 l, n9 h, 368-2 l, 368-2 h, n9 l (Complex)
- 368-2 l (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 s-6p in complex with 9 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- N9 l (22 kDa, Protein from Homo sapiens)
SARS-CoV-2 NTD in complex with N9 Fab
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7e8f
Q-score: 0.592
Cao Y, Yisimayi A, Bai Y, Huang W, Li X, Zhang Z, Yuan T, An R, Wang J, Xiao T, Du S, Ma W, Song L, Li Y, Li X, Song W, Wu J, Liu S, Li X, Zhang Y, Su B, Guo X, Wei Y, Gao C, Zhang N, Zhang Y, Dou Y, Xu X, Shi R, Lu B, Jin R, Ma Y, Qin C, Wang Y, Feng Y, Xiao J, Xie XS
Cell Res (2021) 31 pp. 732-741 [ DOI: doi:10.1038/s41422-021-00514-9 Pubmed: 34021265 ]
- 604 l (23 kDa, Protein from Homo sapiens)
- N9, 368-2 and 604h fab (Complex)
- N9 h (24 kDa, Protein from Homo sapiens)
- Sars-cov-2 ntd and rbd (Complex from Homo sapiens)
- 368-2 h (24 kDa, Protein from Homo sapiens)
- 604 h (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (33 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 368-2 l (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 ntd in complex with n9 fab (Complex from SARS coronavirus Tor2)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- N9 l (22 kDa, Protein from Homo sapiens)
Structural basis for control of antibiotic production by bacterial hormones
Zhou S, Bhukya H, Malet N, Harrison PJ, Rea D, Belousoff MJ, Venugopal H, Sydor PK, Styles KM, Song L, Cryle MJ, Alkhalaf LM, Fulop V, Challis GL, Corre C
Nature (2021) 590 pp. 463-467 [ Pubmed: 33536618 DOI: doi:10.1038/s41586-021-03195-x ]
- Protein mmfr (Protein from Streptomyces coelicolor A3(2))
- Synthetic dna (DNA from Streptomyces coelicolor A3(2))
- Protein-dna complex (114 kDa, Complex from Streptomyces coelicolor A3(2))
BD23-Fab in complex with the S ectodomain trimer
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7byr
Q-score: 0.441
Cao Y, Su B, Guo X, Sun W, Deng Y, Bao L, Zhu Q, Zhang X, Zheng Y, Geng C, Chai X, He R, Li X, Lv Q, Zhu H, Deng W, Xu Y, Wang Y, Qiao L, Tan Y, Song L, Wang G, Du X, Gao N, Liu J, Xiao J, Su XD, Du Z, Feng Y, Qin C, Qin C, Jin R, Xie XS
Cell (2020) 182 pp. 73-84.e16 [ Pubmed: 32425270 DOI: doi:10.1016/j.cell.2020.05.025 ]
- Sars-cov-2 spike glycoprotein (Complex from SARS coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab23-fab-light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab23-fab-heavy chain (13 kDa, Protein from Homo sapiens)
- Ab23-fab (Complex from Homo sapiens)
- Bd23-fab in complex with the s ectodomain trimer (Complex)
Cryo-EM Structure of human ATR-ATRIP complex
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 5yz0
Q-score: 0.281
Rao Q, Liu M, Tian Y, Wu Z, Hao Y, Song L, Qin Z, Ding C, Wang HW, Wang J, Xu Y
Cell Res (2018) 28 pp. 143-156 [ DOI: doi:10.1038/cr.2017.158 Pubmed: 29271416 ]
- Serine/threonine-protein kinase atr (301 kDa, Protein from Homo sapiens)
- Atr-atrip complex (700 MDa, Complex from Homo sapiens)
- Atr-interacting protein (85 kDa, Protein from Homo sapiens)
Structure of the p53/human RNA polymerase II assembly
Singh SK, Qiao Z, Song L, Jani V, Rice W, Eng E, Coleman RA, Liu WL
Genes Dev (2016) 30 pp. 2527-2537 [ Pubmed: 27920087 DOI: doi:10.1101/gad.285692.116 ]
- Binary complex of p53 with human rna polymerase ii (570 kDa, Complex from Homo sapiens)
Antibody Recognition of the Pandemic H1N1 Influenza Hemagglutinin Receptor Binding Site
Hong M, Lee PS, Hoffman RM, Zhu X, Krause JC, Laursen NS, Yoon SI, Song L, Tussey L, Crowe JE, Ward AB, Wilson IA
J Virol (2013) 87 pp. 12471-12480 [ DOI: doi:10.1128/JVI.01388-13 Pubmed: 24027321 ]