cryo-EM of human GLP-1R bound to non-peptide agonist LY3502970
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6xox
Q-score: 0.482
Kawai T, Sun B, Yoshino H, Feng D, Suzuki Y, Fukazawa M, Nagao S, Wainscott DB, Showalter AD, Droz BA, Kobilka TS, Coghlan MP, Willard FS, Kawabe Y, Kobilka BK, Sloop KW
PNAS (2020) 117 pp. 29959-29967 [ Pubmed: 33177239 DOI: doi:10.1073/pnas.2014879117 ]
- Nanobody 35 (Complex from Lama glama)
- Trimeric stimulatory g protein (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- 3-[(1s,2s)-1-(5-[(4s)-2,2-dimethyloxan-4-yl]-2-{(4s)-2-(4-fluoro-3,5-dimethylphenyl)-3-[3-(4-fluoro-1-methyl-1h-indazol-5-yl)-2-oxo-2,3-dihydro-1h-imidazol-1-yl]-4-methyl-2,4,6,7-tetrahydro-5h-pyrazolo[4,3-c]pyridine-5-carbonyl}-1h-indol-1-yl)-2-methylcyclopropyl]-1,2,4-oxadiazol-5(4h)-one (882 Da, Ligand)
- Nanobody 35 (17 kDa, Protein from Lama glama)
- Glucagon-like peptide 1 receptor (Complex from Homo sapiens)
- Single-chain variable fragment 16 (Complex from Mus musculus)
- Cryo-em structure of the glucagon-like peptide-1 receptor in complex with g protein and a non-peptide agonist ly3502970 (150 kDa, Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Alpha subunit of gs with n-terminus swapped with equivalent residues in gi,guanine nucleotide-binding protein g(s) subunit alpha isoforms xlas (43 kDa, Protein from Homo sapiens)
- Glucagon-like peptide 1 receptor (51 kDa, Protein from Homo sapiens)
- Single-chain variable fragment scfv16 (27 kDa, Protein from Mus musculus)
Apo form metabotropic glutamate receptor 5 with Nanobody 43
Koehl A, Hu H, Feng D, Sun B, Zhang Y, Robertson MJ, Chu M, Kobilka TS, Laermans T, Steyaert J, Tarrasch J, Dutta S, Fonseca R, Weis WI, Mathiesen JM, Skiniotis G, Kobilka BK
Nature (2019) 566 pp. 79-84 [ Pubmed: 30675062 DOI: doi:10.1038/s41586-019-0881-4 ]
- Metabotropic glutamate receptor 5 - nb43 complex (220 kDa, Complex from Homo sapiens)
- Metabotropic glutamate receptor 5 (Protein from Homo sapiens)
- Nanobody 43 (Protein from Lama glama)
Metabotropic Glutamate Receptor 5 bound to L-quisqualate and Nb43
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6n51
Q-score: 0.341
Koehl A, Hu H, Feng D, Sun B, Zhang Y, Robertson MJ, Chu M, Kobilka TS, Laermans T, Steyaert J, Tarrasch J, Dutta S, Fonseca R, Weis WI, Mathiesen JM, Skiniotis G, Kobilka BK
Nature (2019) 566 pp. 79-84 [ Pubmed: 30675062 DOI: doi:10.1038/s41586-019-0881-4 ]
- Nanobody 43 (13 kDa, Protein from Lama glama)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Metabotropic glutamate receptor 5 (90 kDa, Protein from Homo sapiens)
- Complex between metabotropic glutamate receptor 5 bound to l-quisqualate and nb43 (220 kDa, Complex from Homo sapiens)
- (s)-2-amino-3-(3,5-dioxo-[1,2,4]oxadiazolidin-2-yl)-propionic acid (189 Da, Ligand)
Metabotropic Glutamate Receptor 5 Apo Form
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6n52
Q-score: 0.312
Koehl A, Hu H, Feng D, Sun B, Zhang Y, Robertson MJ, Chu M, Kobilka TS, Laermans T, Steyaert J, Tarrasch J, Dutta S, Fonseca R, Weis WI, Mathiesen JM, Skiniotis G, Kobilka BK
Nature (2019) 566 pp. 79-84 [ Pubmed: 30675062 DOI: doi:10.1038/s41586-019-0881-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Metabotropic glutamate receptor 5 (97 kDa, Protein from Homo sapiens)
- Metabotropic glutamate receptor 5 in nanodiscs (200 kDa, Complex from Homo sapiens)
Cryo-EM structure of the activated Glucagon-like peptide-1 receptor in complex with G protein
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 5vai
Q-score: 0.297
Zhang Y, Sun B, Feng D, Hu H, Chu M, Qu Q, Tarrasch JT, Li S, Sun Kobilka T, Kobilka BK, Skiniotis G
Nature (2017) 546 pp. 248-253 [ DOI: doi:10.1038/nature22394 Pubmed: 28538729 ]
- Glucagon-like peptide 1 (3 kDa, Protein from Homo sapiens)
- Uncharacterized protein (52 kDa, Protein from Oryctolagus cuniculus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Rattus norvegicus)
- The activated glucagon-like peptide-1 receptor in complex with the heterotrimeric gs protein (150 kDa, Complex from Oryctolagus cuniculus)
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (44 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Nanobody 35 (15 kDa, Protein from Lama glama)