Composite cryo-EM map of PhiKZ capsid after applying the "block-based" reconstruction method
Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan JA, Chen Z, Fokine A, Sun L, Fang Q
Nat Commun (2024) 15 pp. 6551-6551 [ DOI: doi:10.1038/s41467-024-50811-1 Pubmed: 39095371 ]
- Gp85 (16 kDa, Protein from Phikzvirus phiKZ)
- Gp28 (36 kDa, Protein from Phikzvirus phiKZ)
- Gp93 (47 kDa, Protein from Phikzvirus phiKZ)
- Gp91 (20 kDa, Protein from Phikzvirus phiKZ)
- Gp35 (29 kDa, Protein from Phikzvirus phiKZ)
- Gp86 (48 kDa, Protein from Phikzvirus phiKZ)
- Gp244 (13 kDa, Protein from Phikzvirus phiKZ)
- Gp119 (20 kDa, Protein from Phikzvirus phiKZ)
- Phikzvirus phikz (Virus from Phikzvirus phiKZ)
- Gp184 (25 kDa, Protein from Phikzvirus phiKZ)
- Gp120 (83 kDa, Protein from Phikzvirus phiKZ)
- Gp162 (57 kDa, Protein from Phikzvirus phiKZ)
Structure of Zika virus at a resolution of 3.1 Angstrom
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6co8
Q-score: 0.507
Sevvana M, Long F, Miller AS, Klose T, Buda G, Sun L, Kuhn RJ, Rossmann MG
Structure (2018) 26 pp. 1169- [ DOI: doi:10.1016/j.str.2018.05.006 Pubmed: 29958768 ]
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- M protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- E protein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
Cryo-EM reconstruction of the bacteriophage T4 isometric capsid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5vf3
Q-score: 0.505
Chen Z, Sun L, Zhang Z, Fokine A, Padilla-Sanchez V, Hanein D, Jiang W, Rossmann MG, Rao VB
PNAS (2017) 114 pp. E8184-E8193 [ Pubmed: 28893988 DOI: doi:10.1073/pnas.1708483114 ]
- Major capsid protein (48 kDa, Protein from Enterobacteria phage T4)
- Highly immunogenic outer capsid protein (40 kDa, Protein from Enterobacteria phage T4)
- Highly immunogenic outer capsid protein (1 kDa, Protein from Enterobacteria phage T4)
- Capsid vertex protein gp24 (45 kDa, Protein from Enterobacteria phage T4)
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
- Enterobacteria phage t4 (Virus from Enterobacteria phage T4)
The cryo-EM structure of Zika Virus
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5ire
Q-score: 0.425
Sirohi D, Chen Z, Sun L, Klose T, Pierson TC, Rossmann MG, Kuhn RJ
Science (2016) 352 pp. 467-470 [ Pubmed: 27033547 DOI: doi:10.1126/science.aaf5316 ]
- M protein (8 kDa, Protein from Zika virus)
- E protein (54 kDa, Protein from Zika virus)
- Zika virus (Virus from Zika virus)
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Resolution: 21.0 Å
EM Method: Single-particle
Fitted PDBs: 3j42
Q-score: 0.062
Wang Z, Li L, Pennington JG, Sheng J, Yap ML, Plevka P, Meng G, Sun L, Jiang W, Rossmann MG
J Virol (2013) 87 pp. 8909-8915 [ Pubmed: 23740974 DOI: doi:10.1128/JVI.00472-13 ]