The local refined map of Omicron spike with bispecific antibody FD01
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 7wop
Q-score: 0.318
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- 16l9 (25 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- Gw01 (26 kDa, Protein from Homo sapiens)
The state 1 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7woq
Q-score: 0.322
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- 16l9 fv (Complex from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omicron spike with 16l9 fv (Complex)
The state 2 of Omicron Spike with bispecific antibody FD01
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wor
Q-score: 0.236
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 and gw01 (Complex from Homo sapiens)
The state 3 of Omicron Spike with bispecific antibody FD01
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 7wos
Q-score: 0.235
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 and gw01 (Complex from Homo sapiens)
The state 4 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7wou
Q-score: 0.24
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 and gw01 (Complex from Homo sapiens)
The state 5 of Omicron Spike with bispecific antibody FD01
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7wov
Q-score: 0.185
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 and gw01 (Complex from Homo sapiens)
The state 6 of Omicron Spike with bispecific antibody FD01
Resolution: 6.11 Å
EM Method: Single-particle
Fitted PDBs: 7wow
Q-score: 0.102
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- 16l9 and gw01 (Complex from Homo sapiens)
SARS-CoV-2 Omicron Spike trimer
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7wz1
Q-score: 0.343
SARS-CoV-2 Spike in complex with IgG 553-15 (S-553-15 dimer trimer )
Resolution: 4.47 Å
EM Method: Single-particle
Fitted PDBs: 7wo4
Q-score: 0.376
Zhan W, Tian X, Zhang X, Xing S, Song W, Liu Q, Hao A, Hu Y, Zhang M, Ying T, Chen Z, Lan F, Sun L
J Virol (2022) 96 pp. e0048022-e0048022 [ DOI: doi:10.1128/jvi.00480-22 Pubmed: 35924918 ]
- Spike with mab15 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mab15 vl (23 kDa, Protein from Homo sapiens)
- Mab15 vh (24 kDa, Protein from Homo sapiens)
SARS-CoV-2 Spike in complex with IgG 553-15 (S-553-15 trimer)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7wo5
Q-score: 0.395
Zhan W, Tian X, Zhang X, Xing S, Song W, Liu Q, Hao A, Hu Y, Zhang M, Ying T, Chen Z, Lan F, Sun L
J Virol (2022) 96 pp. e0048022-e0048022 [ DOI: doi:10.1128/jvi.00480-22 Pubmed: 35924918 ]
- Spike with mab15 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mab15 vl (23 kDa, Protein from Homo sapiens)
- Mab15 vh (24 kDa, Protein from Homo sapiens)