Structure of R2 with 3'UTR and DNA in binding state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ibw
Q-score: 0.385
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- R2 complex (177 kDa, Complex from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
- 3'utr (16 kDa, RNA from Bombyx mori)
- Zinc ion (65 Da, Ligand)
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
Structure of R2 with 3'UTR and DNA in unwinding state
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 8ibx
Q-score: 0.385
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- R2 complex (177 kDa, Complex from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
- 3'utr (16 kDa, RNA from Bombyx mori)
- Zinc ion (65 Da, Ligand)
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8iby
Q-score: 0.342
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- 5'orf rna (72 kDa, RNA from Bombyx mori)
- R2 complex (177 kDa, Complex from Bombyx mori)
- Zinc ion (65 Da, Ligand)
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
Structure of R2 with 5'ORF and 3'UTR
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8ibz
Q-score: 0.435
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ Pubmed: 37301196 DOI: doi:10.1016/j.cell.2023.05.032 ]
- Zinc ion (65 Da, Ligand)
- 5orf-linker-3utr (65 kDa, RNA from Bombyx mori)
- R2 complex (177 kDa, Complex from Bombyx mori)
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
Mouse Pendrin in chloride and bicarbonate in asymmetric state
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 7wl9
Q-score: 0.303
Liu Q, Zhang X, Huang H, Chen Y, Wang F, Hao A, Zhan W, Mao Q, Hu Y, Han L, Sun Y, Zhang M, Liu Z, Li GL, Zhang W, Shu Y, Sun L, Chen Z
Nat Commun (2023) 14 pp. 3012-3012 [ Pubmed: 37230976 DOI: doi:10.1038/s41467-023-38303-0 ]
- Chloride ion (35 Da, Ligand)
- Pendrin (85 kDa, Protein from Mus musculus)
- Mouse pendrin in chloride and bicarbonate in asymmetric state (Complex from Mus musculus)
Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three F61 Fab
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7xmx
Q-score: -0.013
Li X, Pan Y, Yin Q, Wang Z, Shan S, Zhang L, Yu J, Qu Y, Sun L, Gui F, Lu J, Jing Z, Wu W, Huang T, Shi X, Li J, Li X, Li D, Wang S, Yang M, Zhang L, Duan K, Liang M, Yang X, Wang X
Cell Discov (2022) 8 pp. 87-87 [ Pubmed: 36075908 DOI: doi:10.1038/s41421-022-00449-4 ]
- F61 heavy chain (12 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 spike in complex with f61 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- F61 light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three D2 Fab
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7xmz
Q-score: 0.384
Li X, Pan Y, Yin Q, Wang Z, Shan S, Zhang L, Yu J, Qu Y, Sun L, Gui F, Lu J, Jing Z, Wu W, Huang T, Shi X, Li J, Li X, Li D, Wang S, Yang M, Zhang L, Duan K, Liang M, Yang X, Wang X
Cell Discov (2022) 8 pp. 87-87 [ Pubmed: 36075908 DOI: doi:10.1038/s41421-022-00449-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D2 light chain (11 kDa, Protein from Homo sapiens)
- D2 heavy chain (13 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 spike in complex with d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 7xst
Q-score: 0.299
Li X, Pan Y, Yin Q, Wang Z, Shan S, Zhang L, Yu J, Qu Y, Sun L, Gui F, Lu J, Jing Z, Wu W, Huang T, Shi X, Li J, Li X, Li D, Wang S, Yang M, Zhang L, Duan K, Liang M, Yang X, Wang X
Cell Discov (2022) 8 pp. 87-87 [ Pubmed: 36075908 DOI: doi:10.1038/s41421-022-00449-4 ]
- F61 heavy chain (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein (134 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron spike in complex with f61 and d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D2 light chain (11 kDa, Protein from Homo sapiens)
- D2 heavy chain (13 kDa, Protein from Homo sapiens)
- F61 light chain (11 kDa, Protein from Homo sapiens)
Human bile salt exporter ABCB11 in complex with taurocholate
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 7e1a
Q-score: 0.412
Wang L, Hou WT, Wang J, Xu D, Guo C, Sun L, Ruan K, Zhou CZ, Chen Y
Cell Res (2022) 32 pp. 501-504 [ Pubmed: 35043010 DOI: doi:10.1038/s41422-021-00611-9 ]
- Taurocholic acid (515 Da, Ligand)
- Bile salt export pump (146 kDa, Protein from Homo sapiens)
- Human abcb11 in complex with taurocholate (150 kDa, Complex from Homo sapiens)