Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8xpy
Q-score: 0.419
The state 2 complex structure of Omicron spike with Bn03 (2-up RBD, 4 nanobodies)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7whi
Q-score: 0.377
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
- The state 2 complex structure of omicron spike with bn03 (2-up rbd, 4 nanobodies) (Complex)
The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7whj
Q-score: 0.38
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The state 1 complex structure of omicron spike with bn03 (1-up rbd, 3 nanobodies) (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7whk
Q-score: 0.37
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
- Omicron spike with bn03 (Complex)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7vnc
Q-score: 0.387
Yang Z, Wang Y, Jin Y, Zhu Y, Wu Y, Li C, Kong Y, Song W, Tian X, Zhan W, Huang A, Zhou S, Xia S, Tian X, Peng C, Chen C, Shi Y, Hu G, Du S, Wang Y, Xie Y, Jiang S, Lu L, Sun L, Song Y, Ying T
Signal Transduct Target Ther (2021) 6 pp. 378-378 [ Pubmed: 34732694 DOI: doi:10.1038/s41392-021-00810-1 ]
- Complex of sars-cov-2 spike with n3113 (525 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113 (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7vnd
Q-score: 0.408
Yang Z, Wang Y, Jin Y, Zhu Y, Wu Y, Li C, Kong Y, Song W, Tian X, Zhan W, Huang A, Zhou S, Xia S, Tian X, Peng C, Chen C, Shi Y, Hu G, Du S, Wang Y, Xie Y, Jiang S, Lu L, Sun L, Song Y, Ying T
Signal Transduct Target Ther (2021) 6 pp. 378-378 [ Pubmed: 34732694 DOI: doi:10.1038/s41392-021-00810-1 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2-n3113 (Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113 (12 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike with n3113 (530 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113 (Complex)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7vne
Q-score: 0.398
Yang Z, Wang Y, Jin Y, Zhu Y, Wu Y, Li C, Kong Y, Song W, Tian X, Zhan W, Huang A, Zhou S, Xia S, Tian X, Peng C, Chen C, Shi Y, Hu G, Du S, Wang Y, Xie Y, Jiang S, Lu L, Sun L, Song Y, Ying T
Signal Transduct Target Ther (2021) 6 pp. 378-378 [ Pubmed: 34732694 DOI: doi:10.1038/s41392-021-00810-1 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike-n3113.1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113.1 (12 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike with n3113.1 (530 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)