Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8xpy
Q-score: 0.419
Omicron spike trimer with 6m6 antibody
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7wjy
Q-score: 0.31
Wang Y, Zhan W, Liu J, Wang Y, Zhang X, Zhang M, Han L, Ma Y, Lu L, Wen Y, Chen Z, Zhao J, Wu F, Sun L, Huang J
Cell Res (2022) 32 pp. 862-865 [ DOI: doi:10.1038/s41422-022-00684-0 Pubmed: 35768499 ]
- 6m6 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 6m6 light chain (22 kDa, Protein from Homo sapiens)
- Omicron spike with 6m6 (Complex)
- 6m6 heavy chain (24 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Omicron Spike bitrimer with 6m6 antibody
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 7wjz
Q-score: 0.288
Wang Y, Zhan W, Liu J, Wang Y, Zhang X, Zhang M, Han L, Ma Y, Lu L, Wen Y, Chen Z, Zhao J, Wu F, Sun L, Huang J
Cell Res (2022) 32 pp. 862-865 [ DOI: doi:10.1038/s41422-022-00684-0 Pubmed: 35768499 ]
- 6m6 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 6m6 light chain (22 kDa, Protein from Homo sapiens)
- Omicron spike with 6m6 (Complex)
- 6m6 heavy chain (24 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
The state 2 complex structure of Omicron spike with Bn03 (2-up RBD, 4 nanobodies)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7whi
Q-score: 0.377
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
- The state 2 complex structure of omicron spike with bn03 (2-up rbd, 4 nanobodies) (Complex)
The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7whj
Q-score: 0.38
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The state 1 complex structure of omicron spike with bn03 (1-up rbd, 3 nanobodies) (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7whk
Q-score: 0.37
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
- Omicron spike with bn03 (Complex)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7vnc
Q-score: 0.387
Yang Z, Wang Y, Jin Y, Zhu Y, Wu Y, Li C, Kong Y, Song W, Tian X, Zhan W, Huang A, Zhou S, Xia S, Tian X, Peng C, Chen C, Shi Y, Hu G, Du S, Wang Y, Xie Y, Jiang S, Lu L, Sun L, Song Y, Ying T
Signal Transduct Target Ther (2021) 6 pp. 378-378 [ Pubmed: 34732694 DOI: doi:10.1038/s41392-021-00810-1 ]
- Complex of sars-cov-2 spike with n3113 (525 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113 (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7vnd
Q-score: 0.408
Yang Z, Wang Y, Jin Y, Zhu Y, Wu Y, Li C, Kong Y, Song W, Tian X, Zhan W, Huang A, Zhou S, Xia S, Tian X, Peng C, Chen C, Shi Y, Hu G, Du S, Wang Y, Xie Y, Jiang S, Lu L, Sun L, Song Y, Ying T
Signal Transduct Target Ther (2021) 6 pp. 378-378 [ Pubmed: 34732694 DOI: doi:10.1038/s41392-021-00810-1 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2-n3113 (Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113 (12 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike with n3113 (530 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113 (Complex)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7vne
Q-score: 0.398
Yang Z, Wang Y, Jin Y, Zhu Y, Wu Y, Li C, Kong Y, Song W, Tian X, Zhan W, Huang A, Zhou S, Xia S, Tian X, Peng C, Chen C, Shi Y, Hu G, Du S, Wang Y, Xie Y, Jiang S, Lu L, Sun L, Song Y, Ying T
Signal Transduct Target Ther (2021) 6 pp. 378-378 [ Pubmed: 34732694 DOI: doi:10.1038/s41392-021-00810-1 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (135 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike-n3113.1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- N3113.1 (12 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike with n3113.1 (530 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 7v26
Q-score: 0.328
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ Pubmed: 34554412 DOI: doi:10.1007/s13238-021-00871-6 ]
- Xg005 heavy chain (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Xg005 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s (Complex from Homo sapiens)
- Xg005-bound sars-cov-2 s (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xg005 light chain (22 kDa, Protein from Homo sapiens)