Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8iyj
Q-score: 0.35
Zhou L, Liu H, Liu S, Yang X, Dong Y, Pan Y, Xiao Z, Zheng B, Sun Y, Huang P, Zhang X, Hu J, Sun R, Feng S, Zhu Y, Liu M, Gui M, Wu J
Cell (2023) 186 pp. 2897-2910.e19 [ DOI: doi:10.1016/j.cell.2023.05.009 Pubmed: 37295417 ]
- Coiled-coil domain-containing protein 105 (57 kDa, Protein from Mus musculus)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from Mus musculus)
- Protein fam166a (36 kDa, Protein from Mus musculus)
- Ef-hand domain-containing protein 1 (75 kDa, Protein from Mus musculus)
- Uncharacterized protein c10orf82 homolog (25 kDa, Protein from Mus musculus)
- Testis-specific serine/threonine-protein kinase 6 (30 kDa, Protein from Mus musculus)
- Spermatid-specific manchette-related protein 1 (29 kDa, Protein from Mus musculus)
- Ef-hand domain-containing family member b (95 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 53 (62 kDa, Protein from Mus musculus)
- Rib43a-like with coiled-coils protein 1 (45 kDa, Protein from Mus musculus)
- Cilia and flagella-associated protein 77 (32 kDa, Protein from Mus musculus)
- Protein phosphatase 1 regulatory subunit 32 (47 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Mus musculus)
- Sperm-associated antigen 8 (50 kDa, Protein from Mus musculus)
- Piercer of microtubule wall 2 protein (13 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from Mus musculus)
- Family with sequence similarity 183, member b (16 kDa, Protein from Mus musculus)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Mus musculus)
- Tektin-5 (62 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from Mus musculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cilia- and flagella-associated protein 90 (20 kDa, Protein from Mus musculus)
- Tektin-4 (52 kDa, Protein from Mus musculus)
- Testis-expressed sequence 37 protein (21 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from Mus musculus)
- Protein fam166c (23 kDa, Protein from Mus musculus)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from Mus musculus)
- Tektin-2 (50 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 161 (34 kDa, Protein from Mus musculus)
- Outer dense fiber protein 3 (27 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from Mus musculus)
- Enkurin (29 kDa, Protein from Mus musculus)
- Testis expressed 49 (15 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 68 (19 kDa, Protein from Mus musculus)
- Tektin-1 (48 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 276 (18 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from Mus musculus)
- Tektin bundle-interacting protein 1 (23 kDa, Protein from Mus musculus)
- Testis-expressed protein 43 (16 kDa, Protein from Mus musculus)
- Piercer of microtubule wall 1 protein (18 kDa, Protein from Mus musculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Testis, prostate and placenta-expressed protein (24 kDa, Protein from Mus musculus)
- Ef-hand calcium-binding domain-containing protein 6 (176 kDa, Protein from Mus musculus)
- Tektin-3 (56 kDa, Protein from Mus musculus)
- Mouse sperm dmt (Complex from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Parkin coregulated gene protein homolog (27 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 210 (65 kDa, Protein from Mus musculus)
- Tubulin beta-4b chain (49 kDa, Protein from Mus musculus)
- Dual specificity phosphatase 21 (21 kDa, Protein from Mus musculus)
- Nucleoside diphosphate kinase 7 (44 kDa, Protein from Mus musculus)
- Tubulin alpha-3 chain (50 kDa, Protein from Mus musculus)
- Protein flattop (20 kDa, Protein from Mus musculus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7cth
Q-score: 0.421
Sharma A, Zhang X, Dejnirattisai W, Dai X, Gong D, Wongwiwat W, Duquerroy S, Rouvinski A, Vaney MC, Guardado-Calvo P, Haouz A, England P, Sun R, Zhou ZH, Mongkolsapaya J, Screaton GR, Rey FA
Cell (2021) 184 pp. 6052- [ DOI: doi:10.1016/j.cell.2021.11.010 Pubmed: 34852239 ]
- Core protein (8 kDa, Protein from Dengue virus 2)
- Dengue virus (Virus from Dengue virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Core protein (54 kDa, Protein from Dengue virus 2)
- Single chain variable fragment (15 kDa, Protein from Homo sapiens)
- Single chain variable fragment (15 kDa, Protein from Homo sapiens)
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6w19
Q-score: 0.059
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ DOI: doi:10.1038/s41564-020-0758-1 Pubmed: 32719506 ]
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
CryoEM structure and atomic model of the Kaposi's sarcoma-associated herpesvirus capsid
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6b43
Q-score: 0.376
Dai X, Gong D, Lim H, Jih J, Wu TT, Sun R, Zhou ZH
Nature (2018) 553 pp. 521-525 [ DOI: doi:10.1038/nature25438 Pubmed: 29342139 ]
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Human herpesvirus 8 (200 MDa, Virus from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6b1t
Q-score: 0.552
J Virol (2017) 91 [ DOI: doi:10.1128/JVI.00850-17 Pubmed: 28978703 ]
- Pre-protein vi (23 kDa, Protein from Human adenovirus C serotype 5)
- Human adenovirus c serotype 5 (150 MDa, Virus from Human adenovirus C serotype 5)
- Pre-protein vi (3 kDa, Protein from Human adenovirus C serotype 5)
- Pre-hexon-linking protein iiia (65 kDa, Protein from Human adenovirus C serotype 5)
- Pre-histone-like nucleoprotein (1 kDa, Protein from Human adenovirus C serotype 5)
- Hexon protein (108 kDa, Protein from Human adenovirus C serotype 5)
- Pre-hexon-linking protein viii (24 kDa, Protein from Human adenovirus C serotype 5)
- Hexon-interlacing protein (14 kDa, Protein from Human adenovirus C serotype 5)
- Penton protein (63 kDa, Protein from Human adenovirus C serotype 5)