Cryo-EM structure of spyCas9-sgRNA-DNA dimer
Resolution: 5.26 Å
EM Method: Single-particle
Fitted PDBs: 7v59
Q-score: 0.153
Yang M, Sun R, Deng P, Yang Y, Wang W, Liu JG, Chen C
Chem Sci (2021) 12 pp. 12776-12784 [ Pubmed: 34703564 DOI: doi:10.1039/d1sc02633j ]
- Dna (49-mer) (15 kDa, DNA from Streptococcus pyogenes)
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes serotype M1)
- Rna (115-mer) (37 kDa, RNA from Streptococcus pyogenes)
- Ternary complex of spycas9 with sgrna and dna (Complex from Streptococcus pyogenes)
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6w19
Q-score: 0.059
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ DOI: doi:10.1038/s41564-020-0758-1 Pubmed: 32719506 ]
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6w2d
Q-score: 0.28
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ DOI: doi:10.1038/s41564-020-0758-1 Pubmed: 32719506 ]
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6w2e
Q-score: 0.245
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ DOI: doi:10.1038/s41564-020-0758-1 Pubmed: 32719506 ]
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6ppb
Q-score: 0.395
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell (2019) 178 pp. 1329-1343.e12 [ Pubmed: 31447177 DOI: doi:10.1016/j.cell.2019.07.035 ]
- Capsid vertex component 1 (49 kDa, Protein from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Human gammaherpesvirus 8 (Virus from Human gammaherpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Large tegument protein deneddylase (290 kDa, Protein from Human herpesvirus 8)
- Capsid vertex component 2 (61 kDa, Protein from Human herpesvirus 8)
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ppd
Q-score: 0.426
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell (2019) 178 pp. 1329-1343.e12 [ Pubmed: 31447177 DOI: doi:10.1016/j.cell.2019.07.035 ]
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Human gammaherpesvirus 8 (Virus from Human gammaherpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6pph
Q-score: 0.428
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell (2019) 178 pp. 1329-1343.e12 [ Pubmed: 31447177 DOI: doi:10.1016/j.cell.2019.07.035 ]
- Capsid vertex component 1 (49 kDa, Protein from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Human gammaherpesvirus 8 (Virus from Human gammaherpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Large tegument protein deneddylase (290 kDa, Protein from Human herpesvirus 8)
- Capsid vertex component 2 (61 kDa, Protein from Human herpesvirus 8)
CryoEM structure and atomic model of the Kaposi's sarcoma-associated herpesvirus capsid
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6b43
Q-score: 0.376
Dai X, Gong D, Lim H, Jih J, Wu TT, Sun R, Zhou ZH
Nature (2018) 553 pp. 521-525 [ DOI: doi:10.1038/nature25438 Pubmed: 29342139 ]
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Human herpesvirus 8 (200 MDa, Virus from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6b1t
Q-score: 0.552
J Virol (2017) 91 [ DOI: doi:10.1128/JVI.00850-17 Pubmed: 28978703 ]
- Pre-protein vi (23 kDa, Protein from Human adenovirus C serotype 5)
- Human adenovirus c serotype 5 (150 MDa, Virus from Human adenovirus C serotype 5)
- Pre-protein vi (3 kDa, Protein from Human adenovirus C serotype 5)
- Pre-hexon-linking protein iiia (65 kDa, Protein from Human adenovirus C serotype 5)
- Pre-histone-like nucleoprotein (1 kDa, Protein from Human adenovirus C serotype 5)
- Hexon protein (108 kDa, Protein from Human adenovirus C serotype 5)
- Pre-hexon-linking protein viii (24 kDa, Protein from Human adenovirus C serotype 5)
- Hexon-interlacing protein (14 kDa, Protein from Human adenovirus C serotype 5)
- Penton protein (63 kDa, Protein from Human adenovirus C serotype 5)
In situ structures of the genome and genome-delivery apparatus in ssRNA bacteriophage MS2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5tc1
Q-score: 0.483
Dai X, Li Z, Lai M, Shu S, Du Y, Zhou ZH, Sun R
Nature (2017) 541 pp. 112-116 [ Pubmed: 27992877 DOI: doi:10.1038/nature20589 ]
- Capsid protein (13 kDa, Protein from Enterobacteria phage MS2)
- Coat protein of enterobacteria phage ms2 (14 kDa, Complex from Enterobacteria phage MS2)
- The ssrna genome of enterobacteria phage ms2 (1 MDa, Complex from Enterobacteria phage MS2)
- Maturation protein (44 kDa, Protein from Enterobacteria phage MS2)
- Phage ms2 genome (1 MDa, RNA from Enterobacteria phage MS2)
- Maturation protein of enterobacteria phage ms2 (44 kDa, Complex from Enterobacteria phage MS2)
- Enterobacteria phage ms2 (3 MDa, Virus from Enterobacteria phage MS2)
- Capsid shell of enterobacteria phage ms2 (2 MDa, Complex from Enterobacteria phage MS2)