Cryo-EM structure of the SEA complex (consensus map)
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8adl
Q-score: 0.218
Tafur L, Hinterndorfer K, Gabus C, Lamanna C, Bergmann A, Sadian Y, Hamdi F, Kyrilis FL, Kastritis PL, Loewith R
Nature (2022) 611 pp. 399-404 [ Pubmed: 36289347 DOI: doi:10.1038/s41586-022-05370-0 ]
- Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
- Vacuolar membrane-associated protein iml1 (182 kDa, Protein from Saccharomyces cerevisiae)
- Seh-associated protein 4 (117 kDa, Protein from Saccharomyces cerevisiae)
- Nitrogen permease regulator 3 (130 kDa, Protein from Saccharomyces cerevisiae)
- Restriction of telomere capping protein 1 (149 kDa, Protein from Saccharomyces cerevisiae)
- Maintenance of telomere capping protein 5 (131 kDa, Protein from Saccharomyces cerevisiae)
- Seh1-associated complex (seac) (2 MDa, Complex from Saccharomyces cerevisiae)
- Nitrogen permease regulator 2 (69 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin seh1 (39 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of the SEA complex (protomer focused map)
Tafur L, Hinterndorfer K, Gabus C, Lamanna C, Bergmann A, Sadian Y, Hamdi F, Kyrilis FL, Kastritis PL, Loewith R
Nature (2022) 611 pp. 399-404 [ Pubmed: 36289347 DOI: doi:10.1038/s41586-022-05370-0 ]
Cryo-EM structure of the SEA complex (Sea2-Sea3 focused map)
Tafur L, Hinterndorfer K, Gabus C, Lamanna C, Bergmann A, Sadian Y, Hamdi F, Kyrilis FL, Kastritis PL, Loewith R
Nature (2022) 611 pp. 399-404 [ Pubmed: 36289347 DOI: doi:10.1038/s41586-022-05370-0 ]
Cryo-EM structure of the SEA complex (wing focused map)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ae6
Q-score: 0.444
Tafur L, Hinterndorfer K, Gabus C, Lamanna C, Bergmann A, Sadian Y, Hamdi F, Kyrilis FL, Kastritis PL, Loewith R
Nature (2022) 611 pp. 399-404 [ Pubmed: 36289347 DOI: doi:10.1038/s41586-022-05370-0 ]
- Vacuolar membrane-associated protein iml1 (182 kDa, Protein from Saccharomyces cerevisiae)
- Seac wing module (seacit subcomplex) (Complex from Saccharomyces cerevisiae)
- Maintenance of telomere capping protein 5 (131 kDa, Protein from Saccharomyces cerevisiae)
- Nitrogen permease regulator 2 (69 kDa, Protein from Saccharomyces cerevisiae)
- Nitrogen permease regulator 3 (130 kDa, Protein from Saccharomyces cerevisiae)
RNA Polymerase I Open Complex conformation 2 focused refinement on CF
Sadian Y, Baudin F, Tafur L, Murciano B, Wetzel R, Weis F, Muller CW
Nat Commun (2019) 10 pp. 5543-5543 [ Pubmed: 31804486 DOI: doi:10.1038/s41467-019-13510-w ]
RNA Polymerase I Open Complex conformation 2 focused refinement on Pol
Sadian Y, Baudin F, Tafur L, Murciano B, Wetzel R, Weis F, Muller CW
Nat Commun (2019) 10 pp. 5543-5543 [ Pubmed: 31804486 DOI: doi:10.1038/s41467-019-13510-w ]
RNA Polymerase I Closed Conformation 1 (CC1)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6rqh
Q-score: 0.341
Sadian Y, Baudin F, Tafur L, Murciano B, Wetzel R, Weis F, Muller CW
Nat Commun (2019) 10 pp. 5543-5543 [ Pubmed: 31804486 DOI: doi:10.1038/s41467-019-13510-w ]
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Template strand (21 kDa, DNA from synthetic construct)
- Rna polymerase i closed complex conformation 1 (cc1) (Complex)
- Rna polymerase i (Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Nucleic acids (Complex from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Nontemplate strand (21 kDa, DNA from synthetic construct)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factors (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
RNA Polymerase I Closed Conformation 2 (CC2)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6rql
Q-score: 0.355
Sadian Y, Baudin F, Tafur L, Murciano B, Wetzel R, Weis F, Muller CW
Nat Commun (2019) 10 pp. 5543-5543 [ Pubmed: 31804486 DOI: doi:10.1038/s41467-019-13510-w ]
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Template strand (21 kDa, DNA from synthetic construct)
- Rna polymerase i (Complex from Saccharomyces cerevisiae)
- Nucleic acid (Complex from synthetic construct)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Nontemplate strand (21 kDa, DNA from synthetic construct)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i closed complex conformation 2 (cc2) (Complex)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6rqt
Q-score: 0.295
Sadian Y, Baudin F, Tafur L, Murciano B, Wetzel R, Weis F, Muller CW
Nat Commun (2019) 10 pp. 5543-5543 [ Pubmed: 31804486 DOI: doi:10.1038/s41467-019-13510-w ]
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-twh-rrn3-dna (Complex)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Template strand (21 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna polymerase i (Complex from Saccharomyces cerevisiae)
- Dna (Complex from synthetic construct)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Nontemplate strand (22 kDa, DNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
RNA Polymerase I Pre-initiation complex DNA opening intermediate 1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6rrd
Q-score: 0.452
Sadian Y, Baudin F, Tafur L, Murciano B, Wetzel R, Weis F, Muller CW
Nat Commun (2019) 10 pp. 5543-5543 [ Pubmed: 31804486 DOI: doi:10.1038/s41467-019-13510-w ]
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Template strand (21 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna polymerase i (Complex from Saccharomyces cerevisiae)
- Rna polymerase i pre-initiation complex dna opening intermediate 1 (Complex)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Dna (Complex from synthetic construct)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Nontemplate strand (21 kDa, DNA from synthetic construct)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factors (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)