Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6hko
Q-score: 0.478
Tafur L, Sadian Y, Hanske J, Wetzel R, Weis F, Muller CW
eLife (2019) 8 [ DOI: doi:10.7554/eLife.43204 Pubmed: 30913026 ]
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Template strand (11 kDa, DNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (6 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Non-template strand (11 kDa, DNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast rna polymerase i elongation complex bound to nucleotide analog gmpcpp (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6hlq
Q-score: 0.524
Tafur L, Sadian Y, Hanske J, Wetzel R, Weis F, Muller CW
eLife (2019) 8 [ DOI: doi:10.7554/eLife.43204 Pubmed: 30913026 ]
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleic acids (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Template strand (11 kDa, DNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (6 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast rna polymerase i* elongation complex bound to nucleotide analog gmpcpp (Complex)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast rna polymerase i* (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Non-template strand (11 kDa, DNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused)
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6hlr
Q-score: 0.512
Tafur L, Sadian Y, Hanske J, Wetzel R, Weis F, Muller CW
eLife (2019) 8 [ DOI: doi:10.7554/eLife.43204 Pubmed: 30913026 ]
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleic acids (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Template strand (11 kDa, DNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (6 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Non-template strand (11 kDa, DNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Yeast rna polymerase i elongation complex bound to nucleotide analog gmpcpp (core focused) (Complex)
- Yeast rna polymerase i elongation complex (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 6hls
Q-score: 0.515
Tafur L, Sadian Y, Hanske J, Wetzel R, Weis F, Muller CW
eLife (2019) 8 [ DOI: doi:10.7554/eLife.43204 Pubmed: 30913026 ]
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast apo rna polymerase i* (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
RNA polymerase I pre-initiation complex
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5oa1
Q-score: 0.189
Sadian Y, Tafur L, Kosinski J, Jakobi AJ, Wetzel R, Buczak K, Hagen WJ, Beck M, Sachse C, Muller CW
EMBO J (2017) 36 pp. 2698-2709 [ Pubmed: 28739580 DOI: doi:10.15252/embj.201796958 ]
- Rrn3_yeast rna polymerase i-specific transcription initiation factor rrn3 (Protein from Saccharomyces cerevisiae)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex from Saccharomyces cerevisiae)
- Rrn6_yeast rna polymerase i-specific transcription initiation factor rrn6 (Protein from Saccharomyces cerevisiae)
- Non-template dna strand (DNA from synthetic construct)
- Rpab1_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein from Saccharomyces cerevisiae)
- Rpac1_yeast dna-directed rna polymerases i and iii subunit rpac1 (Protein from Saccharomyces cerevisiae)
- Rpab2_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein from Saccharomyces cerevisiae)
- Rpa49_yeast dna-directed rna polymerase i subunit (Protein from Saccharomyces cerevisiae)
- Rpab4_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein from Saccharomyces cerevisiae)
- Rpa34_yeast dna-directed rna polymerase i subunit rpa34 (Protein from Saccharomyces cerevisiae)
- Rpac2_yeast dna-directed rna polymerases i and iii subunit rpac2 (Protein from Saccharomyces cerevisiae)
- Rpa14_yeast dna-directed rna polymerase i subunit rpa14 (Protein from Saccharomyces cerevisiae)
- Rrn7_yeast rna polymerase i-specific transcription initiation factor rrn7 (Protein from Saccharomyces cerevisiae)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex)
- Rpab3_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein from Saccharomyces cerevisiae)
- Rpa43_yeast dna-directed rna polymerase i subunit (Protein from Saccharomyces cerevisiae)
- Rpab5_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein from Saccharomyces cerevisiae)
- Rpa1_yeast dna-directed rna polymerase i subunit rpa190 (Protein from Saccharomyces cerevisiae)
- Rrn11_yeast rna polymerase i-specific transcription initiation factor rrn11 (Protein from Saccharomyces cerevisiae)
- Template dna strand (DNA from synthetic construct)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (875 MDa, Complex)
- Rpa12_yeast dna-directed rna polymerase i subunit rpa12 (Protein from Saccharomyces cerevisiae)
- Rpa2_yeast dna-directed rna polymerase i subunit rpa135 (Protein from Saccharomyces cerevisiae)
RNA polymerase I pre-initiation complex (CF focused refinement)
Sadian Y, Tafur L, Kosinski J, Jakobi AJ, Wetzel R, Buczak K, Hagen WJ, Beck M, Sachse C, Muller CW
EMBO J (2017) 36 pp. 2698-2709 [ Pubmed: 28739580 DOI: doi:10.15252/embj.201796958 ]
- Rrn11_yeast rna polymerase i-specific transcription initiation factor rrn11 (Protein)
- Rrn6_yeast rna polymerase i-specific transcription initiation factor rrn6 (Protein)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex from Saccharomyces cerevisiae)
- Template strand dna (DNA)
- Non-template strand dna (DNA)
- Rrn7_yeast rna polymerase i-specific transcription initiation factor rrn7 (Protein)
RNA polymerase I pre-initiation complex (Pol-Rrn3 focused refinement)
Sadian Y, Tafur L, Kosinski J, Jakobi AJ, Wetzel R, Buczak K, Hagen WJ, Beck M, Sachse C, Muller CW
EMBO J (2017) 36 pp. 2698-2709 [ Pubmed: 28739580 DOI: doi:10.15252/embj.201796958 ]
- Rpa1_yeast dna-directed rna polymerase i subunit rpa190 (Protein)
- Rpa34_yeast dna-directed rna polymerase i subunit rpa34 (Protein)
- Rpab4_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein)
- Rrn3_yeast rna polymerase i-specific transcription initiation factor rrn3 (Protein)
- Rpab3_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein)
- Rpa43_yeast dna-directed rna polymerase i subunit rpa43 (Protein)
- Rpa49_yeast dna-directed rna polymerase i subunit rpa49 (Protein)
- Template dna strand (DNA)
- Rpac2_yeast dna-directed rna polymerases i and iii subunit rpac2 (Protein)
- Non-template dna strand (DNA)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex from Saccharomyces cerevisiae)
- Rpab1_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein)
- Rpab5_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein)
- Rpa12_yeast dna-directed rna polymerase i subunit rpa12 (Protein)
- Rpa2_yeast dna-directed rna polymerase i subunit rpa135 (Protein)
- Rpa14_yeast dna-directed rna polymerase i subunit rpa14 (Protein)
- Rpac1_yeast dna-directed rna polymerases i and iii subunit rpac1 (Protein)
- Rpab2_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein)