Helical reconstruction of Dengue virus serotype 3 complexed with Fab C10
Resolution: 10.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c2s
Q-score: 0.075
Morrone SR, Chew VSY, Lim XN, Ng TS, Kostyuchenko VA, Zhang S, Wirawan M, Chew PL, Lee J, Tan JL, Wang J, Tan TY, Shi J, Screaton G, Morais MC, Lok SM
Nat Commun (2020) 11 pp. 3112-3112 [ DOI: doi:10.1038/s41467-020-16925-y Pubmed: 32561757 ]
- Helical reconstruction of dengue virus serotype 3 complexed with fab c10 (Complex)
- Heavy chain of fab c10 (14 kDa, Protein from Homo sapiens)
- Light chain of fab c10 (11 kDa, Protein from Homo sapiens)
- C10 fab (Complex from Homo sapiens)
- Dengue virus serotype 3 (Complex from Dengue virus 3)
- Envelope protein (43 kDa, Protein from Dengue virus 3)
Helical reconstruction of Zika virus complexed with Fab C10
Resolution: 9.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c2t
Q-score: 0.093
Morrone SR, Chew VSY, Lim XN, Ng TS, Kostyuchenko VA, Zhang S, Wirawan M, Chew PL, Lee J, Tan JL, Wang J, Tan TY, Shi J, Screaton G, Morais MC, Lok SM
Nat Commun (2020) 11 pp. 3112-3112 [ Pubmed: 32561757 DOI: doi:10.1038/s41467-020-16925-y ]
- Envelope protein (54 kDa, Protein from Zika virus)
- C10 fab (Complex from Homo sapiens)
- Zika virus h/pf/2013 strain (Complex from Zika virus)
- Heavy chain from fab c10 (14 kDa, Protein from Homo sapiens)
- Light chain from fab c10 (11 kDa, Protein from Homo sapiens)
- M protein (8 kDa, Protein from Zika virus)
- Helical reconstruction of zika virus complexed with fab c10 (Complex)
Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 6lnt
Q-score: 0.127
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ DOI: doi:10.1038/s41467-020-14647-9 Pubmed: 32060358 ]
- Capsid protein (12 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Pre-membrane protein (18 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Fab dv62.5 light-chain variable region (11 kDa, Protein from Homo sapiens)
- Anti-prm antibody dv62.5 (Complex from Homo sapiens)
- Envelope protein (54 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Zika virus (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus)
- Fab dv62.5 heavy-chain variable region (13 kDa, Protein from Homo sapiens)
Cryo-EM structure of immature Zika virus
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 6lnu
Q-score: 0.133
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ DOI: doi:10.1038/s41467-020-14647-9 Pubmed: 32060358 ]
- Genome polyprotein (54 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Genome polyprotein (18 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
Sub-tomogram averaging of immature Zika virus in complex with Fab DV62.5
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ DOI: doi:10.1038/s41467-020-14647-9 Pubmed: 32060358 ]
Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5h30
Q-score: 0.284
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ DOI: doi:10.1038/ncomms13679 Pubmed: 27882950 ]
- Zika virus complexed with c10 fab at ph 6.5 (Complex)
- Zika virus (Complex from Zika virus)
- Fab c10 (Complex)
- Igg c10 light chain (11 kDa, Protein from Homo sapiens)
- Structural protein e (54 kDa, Protein from Zika virus)
- Igg c10 heavy chain (14 kDa, Protein from Homo sapiens)
- Strutural protein m (8 kDa, Protein from Zika virus)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 5h32
Q-score: 0.073
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ DOI: doi:10.1038/ncomms13679 Pubmed: 27882950 ]
- Fab c10 (Complex)
- Structural protein e (44 kDa, Protein from Zika virus)
- Zika virus (Complex from Zika virus)
- C10 igg light chain variable region (11 kDa, Protein from Homo sapiens)
- C10 igg heavy chain variable region (14 kDa, Protein from Homo sapiens)
- Zika virus complexed with fab c10 at ph 5.0 (Complex)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5h37
Q-score: 0.39
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ DOI: doi:10.1038/ncomms13679 Pubmed: 27882950 ]
- Zika virus complexed with c10 fab at ph 8.0 (Complex)
- Structural protein e (54 kDa, Protein from Zika virus)
- Zika virus (Complex from Zika virus)
- C10 igg light chain variable region (11 kDa, Protein from Homo sapiens)
- C10 igg heavy chain variable region (14 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- C10 fab (Complex)
- Strutural protein m (8 kDa, Protein from Zika virus)