Helical reconstruction of Dengue virus serotype 3 complexed with Fab C10
Resolution: 10.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c2s
Q-score: 0.075
Morrone SR, Chew VSY, Lim XN, Ng TS, Kostyuchenko VA, Zhang S, Wirawan M, Chew PL, Lee J, Tan JL, Wang J, Tan TY, Shi J, Screaton G, Morais MC, Lok SM
Nat Commun (2020) 11 pp. 3112-3112 [ DOI: doi:10.1038/s41467-020-16925-y Pubmed: 32561757 ]
- Envelope protein (43 kDa, Protein from Dengue virus 3)
- Heavy chain of fab c10 (14 kDa, Protein from Homo sapiens)
- Dengue virus serotype 3 (Complex from Dengue virus 3)
- Light chain of fab c10 (11 kDa, Protein from Homo sapiens)
- C10 fab (Complex from Homo sapiens)
- Helical reconstruction of dengue virus serotype 3 complexed with fab c10 (Complex)
Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 6lnt
Q-score: 0.127
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ Pubmed: 32060358 DOI: doi:10.1038/s41467-020-14647-9 ]
- Capsid protein (12 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Anti-prm antibody dv62.5 (Complex from Homo sapiens)
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus)
- Pre-membrane protein (18 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Envelope protein (54 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Zika virus (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Fab dv62.5 light-chain variable region (11 kDa, Protein from Homo sapiens)
- Fab dv62.5 heavy-chain variable region (13 kDa, Protein from Homo sapiens)
Cryo-EM structure of immature Zika virus
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 6lnu
Q-score: 0.133
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ Pubmed: 32060358 DOI: doi:10.1038/s41467-020-14647-9 ]
- Genome polyprotein (18 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Genome polyprotein (54 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 6.5
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5h30
Q-score: 0.284
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ Pubmed: 27882950 DOI: doi:10.1038/ncomms13679 ]
- Igg c10 heavy chain (14 kDa, Protein from Homo sapiens)
- Structural protein e (54 kDa, Protein from Zika virus)
- Strutural protein m (8 kDa, Protein from Zika virus)
- Zika virus complexed with c10 fab at ph 6.5 (Complex)
- Fab c10 (Complex)
- Zika virus (Complex from Zika virus)
- Igg c10 light chain (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 5h32
Q-score: 0.073
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ Pubmed: 27882950 DOI: doi:10.1038/ncomms13679 ]
- C10 igg light chain variable region (11 kDa, Protein from Homo sapiens)
- Zika virus complexed with fab c10 at ph 5.0 (Complex)
- Structural protein e (44 kDa, Protein from Zika virus)
- Fab c10 (Complex)
- Zika virus (Complex from Zika virus)
- C10 igg heavy chain variable region (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5h37
Q-score: 0.39
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ Pubmed: 27882950 DOI: doi:10.1038/ncomms13679 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Structural protein e (54 kDa, Protein from Zika virus)
- Strutural protein m (8 kDa, Protein from Zika virus)
- C10 igg light chain variable region (11 kDa, Protein from Homo sapiens)
- Zika virus complexed with c10 fab at ph 8.0 (Complex)
- Zika virus (Complex from Zika virus)
- C10 igg heavy chain variable region (14 kDa, Protein from Homo sapiens)
- C10 fab (Complex)