Cryo-EM structure of neutralizing antibody 8G3 in complex with BA.1 RBD
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9js4
Q-score: 0.434
Liao Y, Ma H, Wang Z, Wang S, He Y, Chang Y, Zong H, Tang H, Wang L, Ke Y, Cai H, Li P, Tang J, Chen H, Drelich A, Peng BH, Hsu J, Tat V, Tseng CK, Song J, Yuan Y, Wu M, Liu J, Yue Y, Zhang X, Wang Z, Yang L, Li J, Ni X, Li H, Xiang Y, Bian Y, Zhang B, Yin H, Dimitrov DS, Gilly J, Han L, Jiang H, Xie Y, Zhu J
PNAS (2025) 122 pp. e2406659122-e2406659122 [ Pubmed: 39908098 DOI: doi:10.1073/pnas.2406659122 ]
- Cryo-em structure of neutralizing antibody 8g3 in complex with ba.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Heavy chain of 8g3 (23 kDa, Protein from Homo heidelbergensis)
- Light chain of 8g3 (23 kDa, Protein from Homo sapiens)
Resolution: 3.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 8s5h
Q-score: 0.408
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8s5i
Q-score: 0.396
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
Full-length human cystathionine beta-synthase, basal state, helical reconstruction
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8s5j
Q-score: 0.434
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
Full-length human cystathionine beta-synthase, basal state, single particle reconstruction
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8s5k
Q-score: 0.341
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
Full-length human cystathionine beta-synthase, basal state, partially degraded tetramer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8s5l
Q-score: 0.454
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Helical assembly of full-length human cystathionine beta-synthase in the basal state (Complex from Homo sapiens)
- Cystathionine beta-synthase (60 kDa, Protein from Homo sapiens)
- Cystathionine beta-synthase (60 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8s5m
Q-score: 0.222
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
McCorvie TJ, Adamoski D, Machado RAC, Tang J, Bailey HJ, Ferreira DSM, Strain-Damerell C, Basle A, Ambrosio ALB, Dias SMG, Yue WW
Nat Commun (2024) 15 pp. 2931-2931 [ Pubmed: 38575566 DOI: doi:10.1038/s41467-024-46864-x ]
Resolution: 3.77 Å
EM Method: Single-particle
Fitted PDBs: 8dtk
Q-score: 0.437
Malewana RD, Stalls V, May A, Lu X, Martinez DR, Schafer A, Li D, Barr M, Sutherland LL, Lee E, Parks R, Beck WE, Newman A, Bock KW, Minai M, Nagata BM, DeMarco CT, Denny TN, Oguin 3rd TH, Rountree W, Wang Y, Mansouri K, Edwards RJ, Sempowski GD, Eaton A, Muramatsu H, Henderson R, Tam Y, Barbosa C, Tang J, Cain DW, Santra S, Moore IN, Andersen H, Lewis MG, Golding H, Seder R, Khurana S, Montefiori DC, Pardi N, Weissman D, Baric RS, Acharya P, Haynes BF, Saunders KO
bioRxiv (2023) [ DOI: doi:10.1101/2023.12.18.572191 Pubmed: 38187726 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dh1047 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rbd directed antibody dh1047 in complex with sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Dh1047 fab light chain (12 kDa, Protein from Homo sapiens)