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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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primary_citation_author:"Tang K" AND author_orcid:"0000-0002-1842-8633" AND author_name:"Gy"

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EMD-33929

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PSII-Pcb Dimer of Acaryochloris Marina

Release date: Aug. 16, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ymi
Q-score: 0.538

Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G

Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ Pubmed: 38394197 DOI: doi:10.1126/sciadv.adk7140 ]

Sample:

Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Chlorophyll d (895 Da, Ligand)
Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Bicarbonate ion (61 Da, Ligand)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
Fe (ii) ion (55 Da, Ligand)
Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
Psii-pcb dimer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
(1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
Pheophytin a (871 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
Protoporphyrin ix containing fe (616 Da, Ligand)
Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
(6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)

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EMD-33933

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PSII-Pcb Tetramer of Acaryochloris Marina

Release date: Aug. 16, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ymm
Q-score: 0.415

Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G

Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ Pubmed: 38394197 DOI: doi:10.1126/sciadv.adk7140 ]

Sample:

Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Chlorophyll d (895 Da, Ligand)
Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Psii-pcb tetramer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
Bicarbonate ion (61 Da, Ligand)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
Fe (ii) ion (55 Da, Ligand)
Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
(1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
Pheophytin a (871 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
Protoporphyrin ix containing fe (616 Da, Ligand)
Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
(6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)

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EMD-33401

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PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens

Release date: April 26, 2023
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7xqp
Q-score: 0.536

Zhang S, Tang K, Yan Q, Li X, Shen L, Wang W, He YK, Kuang T, Han G, Shen JR, Zhang X

Nat Plants (2023) 9 pp. 832-846 [ Pubmed: 37095225 DOI: doi:10.1038/s41477-023-01401-4 ]

Sample:

Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Psak (8 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Physcomitrium patens)
Beta-carotene (536 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
Psao (9 kDa, Protein from Physcomitrium patens)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Physcomitrium patens)
Predicted protein psad (15 kDa, Protein from Physcomitrium patens)
Chlorophyll b (907 Da, Ligand)
Psi-f (17 kDa, Protein from Physcomitrium patens)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
Psi-g (10 kDa, Protein from Physcomitrium patens)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Psi-lhci-lhcii-lhcb9 supercomplex of physcomitrella patens (Complex from Physcomitrium patens)
Psi subunit v (17 kDa, Protein from Physcomitrium patens)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Psah photosystem i reaction center subunit (10 kDa, Protein from Physcomitrium patens)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Psae (6 kDa, Protein from Physcomitrium patens)

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Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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