Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8rdu
Q-score: 0.559
Tenjo-Castano F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G
Mol Cell (2024) 84 pp. 2353- [ Pubmed: 38834066 DOI: doi:10.1016/j.molcel.2024.05.005 ]
- Re (22 kDa, DNA from Scytonema hofmannii)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Scytonema hofmannii)
- Shtnsc (31 kDa, Protein from Scytonema hofmannii)
- Target strand -le (40 kDa, DNA from Scytonema hofmannii)
- Magnesium ion (24 Da, Ligand)
- Type v-k crispr-associated transposon post-transposition state after transesterification (1 MDa, Complex from Scytonema hofmannii)
- Water (18 Da, Ligand)
- Le (23 kDa, DNA from Scytonema hofmannii)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Sgrna (84 kDa, RNA from Scytonema hofmannii)
- Tnsb (66 kDa, Protein from Scytonema hofmannii)
- Tniq (20 kDa, Protein from Scytonema hofmannii)
- Shcas12k (79 kDa, Protein from Scytonema hofmannii)
- Zinc ion (65 Da, Ligand)
- Non-target strand - le (20 kDa, DNA from Scytonema hofmannii)
- Non-target strand - re (24 kDa, DNA from Scytonema hofmannii)
- Target strand (4 kDa, DNA from Scytonema hofmannii)
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8rkt
Q-score: 0.609
Tenjo-Castano F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G
Mol Cell (2024) 84 pp. 2353- [ Pubmed: 38834066 DOI: doi:10.1016/j.molcel.2024.05.005 ]
- Small ribosomal subunit protein us15 (10 kDa, Protein from Scytonema hofmannii)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Sgrna (84 kDa, RNA from Scytonema hofmannii)
- Tniq (20 kDa, Protein from Scytonema hofmannii)
- Shcas12k (79 kDa, Protein from Scytonema hofmannii)
- Zinc ion (65 Da, Ligand)
- Non-target strand - le (20 kDa, DNA from Scytonema hofmannii)
- Recognition complex (Complex from Scytonema hofmannii)
- Target strand - le (40 kDa, DNA from Scytonema hofmannii)
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8rku
Q-score: 0.605
Tenjo-Castano F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G
Mol Cell (2024) 84 pp. 2353- [ Pubmed: 38834066 DOI: doi:10.1016/j.molcel.2024.05.005 ]
- Magnesium ion (24 Da, Ligand)
- Type v-k crispr-associated transposon post-transposition state after transesterification (1 MDa, Complex from Scytonema hofmannii)
- Water (18 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Non-target strand - le (20 kDa, DNA from Scytonema hofmannii)
- Shtnsc (31 kDa, Protein from Scytonema hofmannii)
- Target strand - le (40 kDa, DNA from Scytonema hofmannii)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8rkv
Q-score: 0.427
Tenjo-Castano F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G
Mol Cell (2024) 84 pp. 2353- [ Pubmed: 38834066 DOI: doi:10.1016/j.molcel.2024.05.005 ]
- Non-target strand - le (20 kDa, DNA from Scytonema hofmannii)
- Re (22 kDa, DNA from Scytonema hofmannii)
- Magnesium ion (24 Da, Ligand)
- Target strand (4 kDa, DNA from Scytonema hofmannii)
- Tnsb (66 kDa, Protein from Scytonema hofmannii)
- Le (23 kDa, DNA from Scytonema hofmannii)
- Type v-k crispr-associated transposon post-transposition state after transesterification (tnsb domain) (1 MDa, Complex from Scytonema hofmannii)
- Non-target strand - re (24 kDa, DNA from Scytonema hofmannii)
- Target strand - le (40 kDa, DNA from Scytonema hofmannii)
Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8axa
Q-score: 0.458
Tenjo-Castano F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G
Mol Cell (2024) 84 pp. 2353-2367.e5 [ Pubmed: 38834066 DOI: doi:10.1016/j.molcel.2024.05.005 ]
- Dna target strand (16 kDa, DNA from Scytonema hofmannii)
- Water (18 Da, Ligand)
- Sgrna (84 kDa, RNA from Scytonema hofmannii)
- Dna non-target strand (17 kDa, DNA from Scytonema hofmannii)
- Cas12k (74 kDa, Protein from Scytonema hofmannii)
- Ternary complex of shcas12k bound to sgrna and dsdna. (193 kDa, Complex from Scytonema hofmannii)
Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8axb
Q-score: 0.433
Tenjo-Castano F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G
Mol Cell (2024) 84 pp. 2353-2367.e5 [ Pubmed: 38834066 DOI: doi:10.1016/j.molcel.2024.05.005 ]
- Binary complex of shcas12k bound to sgrna. (159 kDa, Complex from Scytonema hofmannii)
- Water (18 Da, Ligand)
- Cas12k (74 kDa, Protein from Scytonema hofmannii)
- Sgrna (84 kDa, RNA from Scytonema hofmannii)
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8aa5
Q-score: 0.519
Tenjo-Castano F, Sofos N, Lopez-Mendez B, Stutzke LS, Fuglsang A, Stella S, Montoya G
Nat Commun (2022) 13 pp. 5792-5792 [ DOI: doi:10.1038/s41467-022-33504-5 Pubmed: 36184667 ]
- Water (18 Da, Ligand)
- Ternary complex of shtnsb transposase with strand transfer complex dna. (359 kDa, Complex from Scytonema hofmannii)
- Le_target (24 kDa, DNA from Scytonema hofmannii)
- Target_1 (4 kDa, DNA from Scytonema hofmannii)
- Tnsb (68 kDa, Protein from Scytonema hofmannii)
- Target_2 (4 kDa, DNA from Scytonema hofmannii)
- Re_target (24 kDa, DNA from Scytonema hofmannii)
- Le_polya (23 kDa, DNA from Scytonema hofmannii)
- Re_polya (22 kDa, DNA from Scytonema hofmannii)