C1 symmetric cryoEM structure of Azotobacter vinelandii MoFeP under non-turnover conditions
Resolution: 1.91 Å
EM Method: Single-particle
Fitted PDBs: 7ut6
Q-score: 0.758
Rutledge HL, Cook BD, Nguyen HPM, Herzik Jr MA, Tezcan FA
Science (2022) 377 pp. 865-869 [ Pubmed: 35901182 DOI: doi:10.1126/science.abq7641 ]
- Water (18 Da, Ligand)
- Iron-sulfur-molybdenum cluster with interstitial carbon (787 Da, Ligand)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Heterotetrameric mofep from azotobacter vinelandii (233 kDa, Complex from Azotobacter vinelandii DJ)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Nitrogenase molybdenum-iron protein beta chain (59 kDa, Protein from Azotobacter vinelandii DJ)
- Nitrogenase molybdenum-iron protein alpha chain (55 kDa, Protein from Azotobacter vinelandii DJ)
- Fe (iii) ion (55 Da, Ligand)
C2 symmetric cryoEM structure of Azotobacter vinelandii MoFeP under non-turnover conditions
Resolution: 1.91 Å
EM Method: Single-particle
Fitted PDBs: 7ut7
Q-score: 0.792
Rutledge HL, Cook BD, Nguyen HPM, Herzik Jr MA, Tezcan FA
Science (2022) 377 pp. 865-869 [ Pubmed: 35901182 DOI: doi:10.1126/science.abq7641 ]
- Water (18 Da, Ligand)
- Iron-sulfur-molybdenum cluster with interstitial carbon (787 Da, Ligand)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Heterotetrameric mofep from azotobacter vinelandii (233 kDa, Complex from Azotobacter vinelandii DJ)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Nitrogenase molybdenum-iron protein beta chain (59 kDa, Protein from Azotobacter vinelandii DJ)
- Nitrogenase molybdenum-iron protein alpha chain (55 kDa, Protein from Azotobacter vinelandii DJ)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7ut8
Q-score: 0.597
Rutledge HL, Cook BD, Nguyen HPM, Herzik Jr MA, Tezcan FA
Science (2022) 377 pp. 865-869 [ Pubmed: 35901182 DOI: doi:10.1126/science.abq7641 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Iron-sulfur-molybdenum cluster with interstitial carbon (787 Da, Ligand)
- Nitrogenase iron protein gamma chain (31 kDa, Protein from Azotobacter vinelandii DJ)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Azotobacter vinelandii nitrogenase complex (1:1 fep:mofep, atp-bound) during catalytic n2 reduction (296 kDa, Complex from Azotobacter vinelandii DJ)
- Nitrogenase molybdenum-iron protein beta chain (59 kDa, Protein from Azotobacter vinelandii DJ)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nitrogenase molybdenum-iron protein alpha chain (55 kDa, Protein from Azotobacter vinelandii DJ)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 7ut9
Q-score: 0.57
Rutledge HL, Cook BD, Nguyen HPM, Herzik Jr MA, Tezcan FA
Science (2022) 377 pp. 865-869 [ Pubmed: 35901182 DOI: doi:10.1126/science.abq7641 ]
- Azotobacter vinelandii nitrogenase complex (1:1 fep:mofep, atp/adp-bound) during catalytic n2 reduction (296 kDa, Complex from Azotobacter vinelandii DJ)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Iron-sulfur-molybdenum cluster with interstitial carbon (787 Da, Ligand)
- Nitrogenase iron protein gamma chain (31 kDa, Protein from Azotobacter vinelandii DJ)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Nitrogenase molybdenum-iron protein beta chain (59 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Nitrogenase molybdenum-iron protein alpha chain (55 kDa, Protein from Azotobacter vinelandii DJ)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7uta
Q-score: 0.584
Rutledge HL, Cook BD, Nguyen HPM, Herzik Jr MA, Tezcan FA
Science (2022) 377 pp. 865-869 [ Pubmed: 35901182 DOI: doi:10.1126/science.abq7641 ]
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Iron-sulfur-molybdenum cluster with interstitial carbon (787 Da, Ligand)
- Nitrogenase iron protein gamma chain (31 kDa, Protein from Azotobacter vinelandii DJ)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Beryllium (9 Da, Ligand)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Nitrogenase molybdenum-iron protein beta chain (59 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Befx inhibited azotobacter vinelandii nitrogenase complex. inhibition occurred during catalytic n2 reduction (359 kDa, Complex from Azotobacter vinelandii DJ)
- Nitrogenase molybdenum-iron protein alpha chain (55 kDa, Protein from Azotobacter vinelandii DJ)
- Fe (iii) ion (55 Da, Ligand)
CryoEM structure of Azotobacter vinelandii nitrogenase MoFeP during catalytic N2 reduction
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8dpn
Q-score: 0.64
Rutledge HL, Cook BD, Nguyen HPM, Herzik Jr MA, Tezcan FA
Science (2022) 377 pp. 865-869 [ Pubmed: 35901182 DOI: doi:10.1126/science.abq7641 ]
- Water (18 Da, Ligand)
- Iron-sulfur-molybdenum cluster with interstitial carbon (787 Da, Ligand)
- Azotobacter vinelandii nitrogenase mofep during catalytic n2 reduction (296 kDa, Complex from Azotobacter vinelandii DJ)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Nitrogenase molybdenum-iron protein beta chain (59 kDa, Protein from Azotobacter vinelandii DJ)
- Nitrogenase molybdenum-iron protein alpha chain (55 kDa, Protein from Azotobacter vinelandii DJ)
- Fe (iii) ion (55 Da, Ligand)
Cryo-EM structure of Bimetallic dodecameric cage design 3 (BMC3) from cytochrome cb562
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6ovh
Q-score: 0.631
Golub E, Subramanian RH, Esselborn J, Alberstein RG, Bailey JB, Chiong JA, Yan X, Booth T, Baker TS, Tezcan FA
Nature (2020) 578 pp. 172-176 [ Pubmed: 31969701 DOI: doi:10.1038/s41586-019-1928-2 ]
- Acetohydroxamic acid (75 Da, Ligand)
- Water (18 Da, Ligand)
- Soluble cytochrome b562 (11 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Bimetallic dodecameric cage 3 (bmc3) (150 kDa, Complex from Escherichia coli)
- Heme c (618 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)