ABC transporter NosFY, nucleotide-free in GDN
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7o0z
Q-score: 0.371
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Abc transporter nosfy (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC transporter NosDFY, nucleotide-free in lipid nanodisc
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7o13
Q-score: 0.403
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
CryoEM structure of the ABC transporter NosDFY complexed with nitrous oxide reductase NosZ
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 7qba
Q-score: 0.45
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri)
- Calcium ion (40 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Heteroheptamer complex of noszdfy (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (34 kDa, Protein from Pseudomonas stutzeri)
- Nitrous-oxide reductase (71 kDa, Protein from Pseudomonas stutzeri)
ABC transporter complex NosDFYL in GDN
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 7znq
Q-score: 0.493
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Hetero-hexameric complex of nosdf2y2l (192 kDa, Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper-binding lipoprotein nosl (21 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Zinc ion (65 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC Transporter complex NosDFYL, R-domain 1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7osf
Q-score: 0.431
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Zinc ion (65 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC Transporter complex NosDFYL, consensus refinement
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7osg
Q-score: 0.457
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Zinc ion (65 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC Transporter complex NosDFYL, R-domain 2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7osh
Q-score: 0.438
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Zinc ion (65 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC Transporter complex NosDFYL, R-domain 3
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7osi
Q-score: 0.42
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Zinc ion (65 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC Transporter complex NosDFYL, membrane anchor
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7osj
Q-score: 0.406
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Zinc ion (65 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC transporter NosDFY, nucleotide-free in GDN
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7o0y
Q-score: 0.485
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ Pubmed: 35896743 DOI: doi:10.1038/s41586-022-05015-2 ]
- Water (18 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)